View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19521_high_1 (Length: 764)
Name: NF19521_high_1
Description: NF19521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19521_high_1 |
 | |
|
| [»] scaffold0141 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 19 - 674
Target Start/End: Original strand, 4133564 - 4134219
Alignment:
| Q |
19 |
taaggttatcgtcggagacaccgttcgtatcagaatcactcaacgcgagtatgaagccgaactctctgtcaacgaaattcctgaagcagaaattggaaag |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133564 |
taaggttatcgtcggagtcaccgttcgtatcagaatcactcaacgcgagtatgaagccgaactctctgtcaacgaaattcctgaagcagaaattggaaag |
4133663 |
T |
|
| Q |
119 |
tatgtggccaaatttgaaaccttgggccatcactcccgcttggcagaggtttcttcaagttcaattttcactcaatggaagagatgaagaaggtctgggc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4133664 |
tatgtggccaaatttgaaaccttgggccatcactcccgcttggcagaggtttcttcaagttcaattttcactcgatggaagagatgaagaaggtctgggc |
4133763 |
T |
|
| Q |
219 |
gttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacacaatctcacgctcaattgtgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133764 |
gttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacacaatctcacgctcaattgtgg |
4133863 |
T |
|
| Q |
319 |
gtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctctaactatagatgaagcaacac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133864 |
gtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctctaactatagatgaagcaacac |
4133963 |
T |
|
| Q |
419 |
aatcccgtctttttggtcactacgctcgtattcttgttgatgtggatatgtctgataaactttttgattctgttgtggttgagagggaaggttatgcttt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4133964 |
aatcccgtctttttggtcactacgctcgtattcttgttgatgtggatatgtctgatacactttttaattctgttgtggttgagagggaaggttatgcttt |
4134063 |
T |
|
| Q |
519 |
cccggtaaccgttgagtatgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaacattgcaaccgtatcaataatgcacaa |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4134064 |
cccggtaaccgttgagtatgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaagattgcaaccgtatcaataatgcacaa |
4134163 |
T |
|
| Q |
619 |
ttctatgctgctccaagaaaccaccataaaaaccttttcaccaggctgaaccgtcc |
674 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4134164 |
tcctatgctgctccaagaaaccaccagaaaaaccttttcaccaggctgaaccgtcc |
4134219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 102 - 602
Target Start/End: Original strand, 16891962 - 16892460
Alignment:
| Q |
102 |
aagcagaaattggaaagtatgtggccaaatttgaaaccttgggccatcactcccgcttggcagaggtttcttcaagttcaattttcactcaatggaagag |
201 |
Q |
| |
|
|||||||| |||||| | | |||||| || |||| |||||| |||||||||| |||||||||||||| |||||| ||||| || ||||| || |||||| |
|
|
| T |
16891962 |
aagcagaagttggaagggttttggccacatctgaagccttggtccatcactcc-gcttggcagaggttacttcaaattcaacttccactccattgaagag |
16892060 |
T |
|
| Q |
202 |
atgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacacaat |
301 |
Q |
| |
|
||||||||||| ||||| || |||| ||||||| | ||||| || | | | ||||| ||||||||||||||||| |||||||| || || | || | |
|
|
| T |
16892061 |
atgaagaaggtatgggcattcggtgttgttcagttaaagccaggaatattaagattcttctgctggtctaaagactttgatcctcaaaaccagattcagt |
16892160 |
T |
|
| Q |
302 |
ctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctctaac |
401 |
Q |
| |
|
| ||||| || ||||||||||| || | ||||| || |||||| ||||||| |||| ||| |||||||||| |||||||| ||||||||||| || || |
|
|
| T |
16892161 |
cacacgcgcagttgtgggtaaggctcataaatctccctcaagaatattggaggaagaccacactatttgaaatcgcatcaggtattggtacccc-ctcac |
16892259 |
T |
|
| Q |
402 |
tatagatgaagcaacacaatcccgtctttttggtcactacgctcgtattcttgttgatgtggatatgtctgataaactttttgattctgttgtggttgag |
501 |
Q |
| |
|
|||||||||||| | || ||||||||||||||| ||||| | |||||||| | |||||||||||||| ||| || |||||||| || ||||||||| |
|
|
| T |
16892260 |
tatagatgaagccatacgatcccgtctttttgggcactatgtgcgtattctcatggatgtggatatgtccagtaagctgtttgattcggtggtggttgag |
16892359 |
T |
|
| Q |
502 |
agggaaggttatgctttcccggtaaccgttgagtatgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaacattgcaacc |
601 |
Q |
| |
|
|||||||||| || ||||||||| | || |||||||| || | ||| |||||||| | | | |||||| ||||||| ||||||||||| | |||||||| |
|
|
| T |
16892360 |
agggaaggttttgtcttcccggtagctgtggagtatgagcgtaagccttcattttgttataactgtaagttgttaggtcactctattcagctttgcaacc |
16892459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 82 - 608
Target Start/End: Original strand, 19851187 - 19851712
Alignment:
| Q |
82 |
ctctgtcaacgaaattcctgaagcagaaattggaaagtatgtggccaaatttgaaaccttgggccatcactcccgcttggcagaggtttcttcaagttca |
181 |
Q |
| |
|
|||||||| |||| ||| ||||||||||| ||||| |||||||||| ||||||||||| ||| |||| ||||| |||||| ||||||| ||||||||||| |
|
|
| T |
19851187 |
ctctgtcatcgaagttcttgaagcagaaactggaaggtatgtggccgaatttgaaaccctggtccattactcc-gcttggtagaggttacttcaagttca |
19851285 |
T |
|
| Q |
182 |
attttcactcaatggaagagatgaagaaggtctgggcgttgggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcga |
281 |
Q |
| |
|
|||| ||||| || ||||||||||||| ||| ||||||||||||| ||||||| ||||||||||| | ||| | ||||||||||||||||| || || || |
|
|
| T |
19851286 |
atttccactccattgaagagatgaagagggtttgggcgttgggtgttgttcagttgaagcctgggatgctgagattcttttgctggtctaaggattttga |
19851385 |
T |
|
| Q |
282 |
tcctcacaatcaaacacaatctcacgctcaattgtgggtaagacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatca |
381 |
Q |
| |
|
|||||| ||||| | |||||||| ||||||||||||||||| || ||||||| ||||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19851386 |
tcctcaaaatcagattcaatctcatgctcaattgtgggtaaggtttatgaatctcccccaagaatattggaggaagaccactttatttgaaattgcatca |
19851485 |
T |
|
| Q |
382 |
ggaattggtacccctctaactatagatgaagcaacacaatcccgtctttttggtcactacgctcgtattcttgttgatgtggatatgtctgataaacttt |
481 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||| | || |||| |
|
|
| T |
19851486 |
ggaattggtacccccctcactattgatgaagccacacagtcccgtctatttggtcactatgcacgtattctcgttgatgtggatatgtccggaaagcttt |
19851585 |
T |
|
| Q |
482 |
ttgattctgttgtggttgagagggaaggttatgctttcccggtaaccgttgagtatgaacgcaggccatcattttgctctcattgtaagatgttaggaca |
581 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||| | || |||| ||||||||||||||| ||||||| | |
|
|
| T |
19851586 |
ttgattctgtggtggttgagagggaaggttatgccttcccggtagctgttgagtatgaacgtaaaccgccattctgctctcattgtaagttgttaggtcg |
19851685 |
T |
|
| Q |
582 |
ctctattcaacattgcaaccgtatcaa |
608 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19851686 |
ctctattcaacattgcaaccgtatcaa |
19851712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 123 - 602
Target Start/End: Complemental strand, 12581314 - 12580836
Alignment:
| Q |
123 |
tggccaaatttgaaaccttgggccatcactcccgcttggcagaggtttcttcaagttcaattttcactcaatggaagagatgaagaaggtctgggcgttg |
222 |
Q |
| |
|
|||||| || |||| |||||| ||||||||||| |||||||| |||| |||||| ||||| || ||||| || ||||||||||||||||| ||||| ||| |
|
|
| T |
12581314 |
tggccacatctgaagccttggtccatcactccc-cttggcaggggttacttcaaattcaacttccactccattgaagagatgaagaaggtatgggcattg |
12581216 |
T |
|
| Q |
223 |
ggtgctgttcagctgaagcctgggctcctgcgtttcttttgctggtctaaagacttcgatcctcacaatcaaacacaatctcacgctcaattgtgggtaa |
322 |
Q |
| |
|
|||| ||||||| | |||| || | | | ||||| |||| |||||||||||| |||||||| || || | || || |||| || |||||||||| |
|
|
| T |
12581215 |
ggtgttgttcagttaaagctaggaatattaagattcttctgctcgtctaaagactttgatcctcaaaaccagattcagtcacacgtgcagttgtgggtaa |
12581116 |
T |
|
| Q |
323 |
gacttctgaatcttccccaagaacattggagaaagatcactttatttgaaattgcatcaggaattggtacccctctaactatagatgaagcaacacaatc |
422 |
Q |
| |
|
| || |||||| || |||||| ||||||| |||| ||| |||||||||| ||||| || |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
12581115 |
ggctcatgaatccccctcaagaatattggaggaagaccacactatttgaaatcgcatccggtattggtacccctctcactatagatgaaggcacacaatc |
12581016 |
T |
|
| Q |
423 |
ccgtctttttggtcactacgctcgtattcttgttgatgtggatatgtctgataaactttttgattctgttgtggttgagagggaaggttatgctttcccg |
522 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || |||||||||||||| | ||| || |||||||| | ||||||||||||||||||| ||| |||||| |
|
|
| T |
12581015 |
ccgtctttttgggcactatgcacgtattctcgtggatgtggatatgtccggtaagctgtttgattcgatggtggttgagagggaaggttttgccttcccg |
12580916 |
T |
|
| Q |
523 |
gtaaccgttgagtatgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaacattgcaaccg |
602 |
Q |
| |
|
||| | || |||||||| || | ||| |||||||| | ||| |||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
12580915 |
gtagctgtggagtatgagcgtaagccttcattttgttatcactgtaagttgttaggtcactctattcagcattgcaaccg |
12580836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 434 - 752
Target Start/End: Complemental strand, 17637 - 17317
Alignment:
| Q |
434 |
gtcactacgctcgtattcttgttgatgtggatatgtctgataaactttttgattctgttgtggttgagagggaaggttatgctttcccggtaaccgttga |
533 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17637 |
gtcactacgctcgtattctcgttgatgtggatatgtctggtaaattttttgattctgttatggttgagagggaaggttatgtcttcccggtaaccgttga |
17538 |
T |
|
| Q |
534 |
gtatgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaacattgcaaccgtatcaataatgcacaattctatgctgctcca |
633 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17537 |
gtatgaacgcaggccatcatttttctctcattgtaagatgttaggacactctattcaacattgtaaccgtatcaataatgcacaatcctatgctgctcca |
17438 |
T |
|
| Q |
634 |
agaaaccacca-taaaaaccttttcaccaggctgaaccgtcc-nnnnnnncgactcactcaacaaccaatttactccaaattagaatcccttcaatccaa |
731 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17437 |
agaaaccaccagaaaaaaccttttcaacagactgaaccgtccaaaaaaaccgacccactcaacaaccaatttactccaaattagagtcccttcaatccaa |
17338 |
T |
|
| Q |
732 |
cattcacaagcacgatgtctg |
752 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
17337 |
cattcacaagtacgatgtctg |
17317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 17729 - 17664
Alignment:
| Q |
19 |
taaggttatcgtcggagacaccgttcgtatcagaatcactcaacgcgagtatgaagccgaactctc |
84 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17729 |
taaggttatcgtcggagacaccgttcgcatcagaatcactcaacgcgagtatgaagccgaactctc |
17664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 436 - 752
Target Start/End: Original strand, 8424011 - 8424330
Alignment:
| Q |
436 |
cactacgctcgtattcttgttgatgtggatatgtctgataaactttttgattctgttgtggttgagagggaaggttatgctttcccggtaaccgttgagt |
535 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| || |||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8424011 |
cactacgctcgtattctcgttgatgtggatatgtttggtaaaaaaatttattctgttgtggttgagagggaaggttatgttttctcggtaaccgttgagt |
8424110 |
T |
|
| Q |
536 |
atgaacgcaggccatcattttgctctcattgtaagatgttaggacactctattcaacattgcaaccgtatcaataatgcacaattctatgctgctccaag |
635 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8424111 |
atgaacgcattccatcatttttctctcattgtaagatgttaggacactttattcaacattgcaaccgtatcaataatgcacaatcctatgctgctccaag |
8424210 |
T |
|
| Q |
636 |
aaaccacca-taaaaaccttttcaccaggctgaaccgtcc--nnnnnnncgactcactcaacaaccaatttactccaaattagaatcccttcaatccaac |
732 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8424211 |
aaaccaccagaaaaaaccttttcaacaggctgaaccgtccaaaaaaaaccgactcactcaacaaccaatttactccaaattagagtcccttcaatccaac |
8424310 |
T |
|
| Q |
733 |
attcacaagcacgatgtctg |
752 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8424311 |
attcacaagcacgatgtctg |
8424330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 8423917 - 8423982
Alignment:
| Q |
19 |
taaggttatcgtcggagacaccgttcgtatcagaatcactcaacgcgagtatgaagccgaactctc |
84 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
8423917 |
taagattatcgtcggagacaccgttcgcatcaaaatcactcaacacgagtatgaagccgaactctc |
8423982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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