View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19521_high_3 (Length: 555)
Name: NF19521_high_3
Description: NF19521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19521_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 538
Target Start/End: Original strand, 31319206 - 31319726
Alignment:
| Q |
14 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagagagttaataatgtgaaccaaagagctcaatcaaaagct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31319206 |
aggacatagcattcatgcttgctccaagataaatgctgctaccaatgttcaagttactaagag---taataatgtgaaccaaagagctcaatcaaaagct |
31319302 |
T |
|
| Q |
114 |
gatttggccaataagaaaagtgctaaatttcctgtcaatacaattgatgctataactgttaatgcacaagtacaccctcacattgcagcaattggtaata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319303 |
gatttggccaataagaaaagtgctaaatttcctgtcaatacagttgatgctataactgttaatgcacaagtacaccctcacattgcagcaattggtaata |
31319402 |
T |
|
| Q |
214 |
agtctgctaaggtctcttctcatgatgacattcaggagggccccttttgtttcacctgatgattttgaggaaggtgaaatatcagctcctgaaagcaatg |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31319403 |
agtctgctaaggtatcttctcatgatgacattcaggagg-ccccttttgtttcaactgatgattttgaggaaggtgaagtatcagctcctgaaagcaatg |
31319501 |
T |
|
| Q |
314 |
aaattgcagtcctcaacactgaacttcatgctaatgatcagagccagaacattggagacatgaatctcacacttcacaactcatttgaattgcttgaaag |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319502 |
aaattgcagtcctcaacactgaacttcatgctaatgatcagagccagaatattggagacatgaatctcacacttcacaactcatttgaattgcttgaaag |
31319601 |
T |
|
| Q |
414 |
tggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccatattactggatatgcaaattgataaaaatccaattgtggaagac |
513 |
Q |
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| T |
31319602 |
tggttctaagcatgtcataggggaggctaagccaaatgatgaggaatctattcccatattactggatatgcaaattgataaaaatccaattgtggaagac |
31319701 |
T |
|
| Q |
514 |
aattccctagggaaggagaaattga |
538 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
31319702 |
aattccctagggaaggagaaattga |
31319726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 385 - 538
Target Start/End: Original strand, 36769592 - 36769745
Alignment:
| Q |
385 |
cttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccatattactggatatgc |
484 |
Q |
| |
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|||||||| |||||||| |||||||||| || |||| ||||||||||||||||||||||| || ||||||||||| | |||||| || ||||||||| |
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| T |
36769592 |
cttcacaattcatttgagttgcttgaaaatgactctgtgcatgtcataggggaggctaagccaagagatgaggaatccaatcccattatattggatatgc |
36769691 |
T |
|
| Q |
485 |
aaattgataaaaatccaattgtggaagacaattccctagggaaggagaaattga |
538 |
Q |
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|||| ||||||||||||| |||||| ||||||| |||| ||| || ||||||| |
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|
| T |
36769692 |
aaatggataaaaatccaaatgtggaggacaattatctagcgaaagaaaaattga |
36769745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 27147523 - 27147461
Alignment:
| Q |
447 |
aaatgatgaggaatctattcccatattactggatatgcaaattgataaaaatccaattgtgga |
509 |
Q |
| |
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||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| |
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| T |
27147523 |
aaatgataaggaatctaatcccactgaactggatatgcaaatggataaaaatccaagtgtgga |
27147461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 382 - 531
Target Start/End: Complemental strand, 7906665 - 7906516
Alignment:
| Q |
382 |
acacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccatattactggata |
481 |
Q |
| |
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||||||||||| || |||||| |||||||| ||||| |||||||||| |||||| | |||||| || |||||| ||||| || ||||| |||||||||| |
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| T |
7906665 |
acacttcacaattcctttgaactgcttgaaggtggtactgagcatgttatagggtatgctaagacaagtgatgaagaatcgatccccattttactggata |
7906566 |
T |
|
| Q |
482 |
tgcaaattgataaaaatccaattgtggaagacaattccctagggaaggag |
531 |
Q |
| |
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|||| | |||||||||||||| ||||||||| ||||| ||| |||||||| |
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|
| T |
7906565 |
tgcacagtgataaaaatccaaatgtggaagataattcactaaggaaggag |
7906516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 376 - 530
Target Start/End: Complemental strand, 17351357 - 17351201
Alignment:
| Q |
376 |
aatctcacacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccatatta- |
474 |
Q |
| |
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||||||||||| |||||||||||||| || ||||||| || || ||||| ||| ||||||||||||||| | ||| |||| |||| |||||| || |
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| T |
17351357 |
aatctcacactccacaactcatttgagttacttgaaaatgattttgagcctgttataggggaggctaagtcgagtgacaaggactctactcccattatat |
17351258 |
T |
|
| Q |
475 |
-ctggatatgcaaattgataaaaatccaattgtggaagacaattccctagggaagga |
530 |
Q |
| |
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||||||||||||| | ||||||||||| |||||| || || |||||||||||||| |
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|
| T |
17351257 |
tgtggatatgcaaatggctaaaaatccaaatgtggaggaaaagtccctagggaagga |
17351201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 474 - 530
Target Start/End: Original strand, 115906 - 115962
Alignment:
| Q |
474 |
actggatatgcaaattgataaaaatccaattgtggaagacaattccctagggaagga |
530 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
115906 |
actggatatgcaaattgttaaaaatccaagtgtggaggacaattccctagggaagga |
115962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 508
Target Start/End: Complemental strand, 26378718 - 26378565
Alignment:
| Q |
358 |
cagaacattggagaca---tgaatctcacacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatg |
454 |
Q |
| |
|
||||||| |||||||| ||||| |||| ||||||||||||||||| |||||||||| || |||| ||||||| |||||||||||||| | ||||| |
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| T |
26378718 |
cagaacaatggagacaacttgaatatcactcttcacaactcatttgagttgcttgaaaatgacgctgaacatgtcacaggggaggctaagccatgtgatg |
26378619 |
T |
|
| Q |
455 |
aggaatctattcccatattactggatatgcaaattgataaaaatccaattgtgg |
508 |
Q |
| |
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||||| | | ||||| |||||| ||||||| | ||||||||||||| ||||| |
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| T |
26378618 |
aggaacccactcccactatactggttatgcaactggataaaaatccaaatgtgg |
26378565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 530
Target Start/End: Original strand, 11775470 - 11775628
Alignment:
| Q |
372 |
catgaatctcacacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccata |
471 |
Q |
| |
|
||||||||||||||| |||||||||||| | || ||||||| || || ||||| ||| | || ||||||||| || ||| |||| |||| |||||| |
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|
| T |
11775470 |
catgaatctcacactccacaactcatttaagttacttgaaaatgattatgagcctgttacagcggaggctaaatcaagtgacaaggactctactcccatt |
11775569 |
T |
|
| Q |
472 |
ttactggatatgcaaattgataaaaatccaattgtggaagacaattccctagggaagga |
530 |
Q |
| |
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|| ||||||||||||| | ||||||| ||| |||||| || || |||||||||||||| |
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|
| T |
11775570 |
atattggatatgcaaatggctaaaaattcaaatgtggaggaaaagtccctagggaagga |
11775628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 509
Target Start/End: Original strand, 14046998 - 14047135
Alignment:
| Q |
372 |
catgaatctcacacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccata |
471 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| | | |||||| ||| ||||||||||||||| || ||| |||| ||| || |||| |
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|
| T |
14046998 |
catgaatatcacacttcacaactcatttgagttgcttgatcaggatactgagcctgttataggggaggctaagtcaagtgaaaaggactctgtttccatt |
14047097 |
T |
|
| Q |
472 |
ttactggatatgcaaattgataaaaatccaattgtgga |
509 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
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|
| T |
14047098 |
actttggatatgcaaattgataaaaatccaattatgga |
14047135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 509
Target Start/End: Complemental strand, 15485015 - 15484953
Alignment:
| Q |
447 |
aaatgatgaggaatctattcccatattactggatatgcaaattgataaaaatccaattgtgga |
509 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||| |||||| |
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|
| T |
15485015 |
aaatgataaggaatctaatcccactgcactggatatgcaaatggataaaaatccaagtgtgga |
15484953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 523
Target Start/End: Complemental strand, 32929647 - 32929597
Alignment:
| Q |
473 |
tactggatatgcaaattgataaaaatccaattgtggaagacaattccctag |
523 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
32929647 |
tactggatttgcaaatggataaaaatccaaatgtggcagaaaattccctag |
32929597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 536
Target Start/End: Complemental strand, 6632024 - 6631870
Alignment:
| Q |
382 |
acacttcacaactcatttgaattgcttgaaagtggttctgagcatgtcataggggaggctaagctaaatgatgaggaatctattcccatattactggata |
481 |
Q |
| |
|
|||||||| || || |||||||||||||||| || | ||||||| || |||||||| ||||| | | |||||| ||||||| ||||| || |||||| |
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|
| T |
6632024 |
acacttcaaaattcttttgaattgcttgaaaatgatgctgagcaggttataggggatgctaaaatcagtgatgaagaatctaaccccattctattggata |
6631925 |
T |
|
| Q |
482 |
tgcaaattgataaaaatccaattgtggaagacaattccctagggaaggagaaatt |
536 |
Q |
| |
|
|| | ||||| ||||||| || || || ||| |||| ||| |||||||| |||| |
|
|
| T |
6631924 |
tgtacattgacaaaaatcaaaatggggcagagaatttactaaggaaggaggaatt |
6631870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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