View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19521_low_2 (Length: 588)
Name: NF19521_low_2
Description: NF19521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19521_low_2 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 92 - 572
Target Start/End: Original strand, 6364119 - 6364599
Alignment:
| Q |
92 |
tcatttgtcaatttgtgtgcaaatgaagtcttctttcttctgctgatctcacaccctccatcttcaacatatctaacaagaaatcactccatgtgtcaat |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364119 |
tcatttgtcaatttgtgtgcaaatgaagtcttctttcttctgctgatctcacaccctccatcttcaacatatctaacaagaaatcactccatgtgtcaat |
6364218 |
T |
|
| Q |
192 |
aggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcatttggccaatgtccatatttactagggtgcccatctggcctcaacatt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364219 |
aggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcattaggccaatgtccatatttactagggtgcccatctggcctcaacatt |
6364318 |
T |
|
| Q |
292 |
gttgcttgtgttgtatcatataacctaaatttcaatcccttttttcttgcttccttttcagcaattttgaactcttccaattgaatcatataaaactcta |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364319 |
gttgcttgtgttgtatcatataacctaaatttcaatcccttttttcttgcttccttttcagcaattttgaactcttccaattgaatcatataaaactcta |
6364418 |
T |
|
| Q |
392 |
aattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgagggtga |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364419 |
aattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgagggtga |
6364518 |
T |
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| Q |
492 |
aaatgtcctaagaaatgttatgcccttaaaattctgtaaattatttatggctttaaatgcagtcctaaatgctcttctata |
572 |
Q |
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| T |
6364519 |
aaatgtcctaagaaatgttatgcccttaaaattctgtaaattatttatggctttaaatgcagtcctaaatgctcttctata |
6364599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 331 - 572
Target Start/End: Original strand, 6370999 - 6371240
Alignment:
| Q |
331 |
ttttttcttgcttccttttcagcaattttgaactcttccaattgaatcatataaaactctaaattaaatccctctaattgtgtttcattgcttctaaatg |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6370999 |
ttttttcttgcttccttttcagcaattttgaactcttccaattgaatcatatacaactctaaattaaatccctctaattgtgtttcattgcttctaaatg |
6371098 |
T |
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| Q |
431 |
gcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgagggtgaaaatgtcctaagaaatgttatgcccttaaaattctgtaa |
530 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
6371099 |
gcttagttctaacacaattcccaccttgattccataacccattttcaaaatgtgatggtgaaagtgtcctaagaaatgttatgcccttaaaattctttaa |
6371198 |
T |
|
| Q |
531 |
attatttatggctttaaatgcagtcctaaatgctcttctata |
572 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6371199 |
attattgatggctttaaatgcagtcctaaatgctcttctata |
6371240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 2176 - 2326
Alignment:
| Q |
92 |
tcatttgtcaatttgtgtgcaaatgaagtcttctttcttctgctgatctcacac--cctccatcttcaacatatctaacaagaaatcactccatgtgtca |
189 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176 |
tcatttgtcaatttttgtgcaaatgaagtcttttttcttcagctgatctcaccctccctccatcttcaacatatctaacaagaaatcactccatgtgtca |
2275 |
T |
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| Q |
190 |
ataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattc |
240 |
Q |
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| T |
2276 |
ataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattc |
2326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 147 - 572
Target Start/End: Original strand, 6554147 - 6554572
Alignment:
| Q |
147 |
ctccatcttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacattctcattt |
246 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||| || ||||| || ||||| |||||||| |||||||||||||||||||||||||| || | |
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| T |
6554147 |
ctccatcttcaacatttctagcaagaaatcactccatgtatctataggccctggcaaacaccaatgaacacaatcattatacaatgtcacattttcttga |
6554246 |
T |
|
| Q |
247 |
ggccaatgtccatatttactagggtgcccatctggcctcaacattgttgcttgtgttgtatcatataacctaaatttcaatcccttttttcttgcttcct |
346 |
Q |
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|| |||||||||| |||| || || |||||||| ||||| | | ||||| ||||||||| |||||||||||||| || ||| | | || | || |
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| T |
6554247 |
ggtaaatgtccatacctacttggatgaccatctggtctcaataacatagcttgagttgtatcaagcaacctaaatttcaaaccatttctcttggccttct |
6554346 |
T |
|
| Q |
347 |
tttcagcaattttgaactcttccaattgaatcatataaaactctaaattaaatccctctaattgtgtttcattgcttctaaatggcttagttctaacaca |
446 |
Q |
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||| || ||||||| ||||||||||||| |||||||| ||||| | ||| || ||||| || ||||| || ||||||||||||| || | ||| |
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| T |
6554347 |
tttgagaaattttgtactcttccaattggatcatatataactccatattggtcccttctaaccttgcctcattactcttaaatggcttagtccttaaaca |
6554446 |
T |
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| Q |
447 |
attcccaccttgattccataacccattttcaaaatgtgagggtgaaaatgtcctaagaaatgttatgcccttaaaattctgtaaattatttatggcttta |
546 |
Q |
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|||||||||||| ||||||| ||||| ||||||||||| |||| |||||||||||||||||| | ||||||||||| | ||| |||||| |||| || |
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| T |
6554447 |
attcccaccttggttccatataccattctcaaaatgtgatggtgcaaatgtcctaagaaatgtcacacccttaaaattttctaagctatttaaggctcta |
6554546 |
T |
|
| Q |
547 |
aatgcagtcctaaatgctcttctata |
572 |
Q |
| |
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|||||||||||||| ||| ||||||| |
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| T |
6554547 |
aatgcagtcctaaaagcttttctata |
6554572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 6543639 - 6543724
Alignment:
| Q |
154 |
ttcaacatatctaacaagaaatcactccatgtgtcaataggtccaggcaagcaccaatgcacacaatcattatacaatgtcacatt |
239 |
Q |
| |
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|||||||||| || ||| || ||| ||||||| |||| ||||||||| || |||||||| ||||||||||| || ||||||||||| |
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| T |
6543639 |
ttcaacatatatagcaataactcattccatgtatcaacaggtccaggtaaacaccaatgaacacaatcattgtaaaatgtcacatt |
6543724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 15256695 - 15256740
Alignment:
| Q |
179 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
224 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
15256695 |
tccatgtgtctataggtccaggcaaacaccaatgaacacaatcatt |
15256740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 15265220 - 15265265
Alignment:
| Q |
179 |
tccatgtgtcaataggtccaggcaagcaccaatgcacacaatcatt |
224 |
Q |
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||||||| ||||| ||||||||||| |||||||| ||||||||||| |
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| T |
15265220 |
tccatgtatcaattggtccaggcaaacaccaatgaacacaatcatt |
15265265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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