View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_1 (Length: 623)
Name: NF19522_high_1
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 33537212 - 33537806
Alignment:
| Q |
18 |
caaaatagacttgcctaacaagtaacaataatttcaacnnnnnnncatgttgttggtatataactatttttgacagaattttgttgaattctaataaata |
117 |
Q |
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| T |
33537212 |
caaaatagacttgcctaacaagtaacaataatttcaactttttttcatgttgttggtatataactatttttgacagaattttgttgaattctaataaata |
33537311 |
T |
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| Q |
118 |
taactatggatgcagataacggtaataatagtgacaccaatagagtaaaaggagacaccaatagtgtaaaaggagaagggaagagaaacagcattcgaag |
217 |
Q |
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| T |
33537312 |
taactatggatgcagataacggtaataatagtgacaccaatagagtaaaaggagacaccaatagtgtaaaaggagaagggaagagaaacagcattcgaag |
33537411 |
T |
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| Q |
218 |
atcaaggccgcgttcatcagagaaccaatcctcaacgaactcgtctccaccacgagaggaagtaggatccacaaagacaactcgacgacaccgacaaagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
33537412 |
atcaaggccgcgttcatcagagaaccaatcctcaacgaactcgtctccaccacgagaggaaggagcatccacaaagacaactcgacgacaccgacaaagt |
33537511 |
T |
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| Q |
318 |
cgtcaatccaatgaagatgaagaaaacagcaagcccccaactacaaaacaatctcgcagaaaggcaaaatcatcgtcggaggaaaaggataaggaaactt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537512 |
cgtcaatccaatgaagatgaagaaaacagcaagcccccaactacaaaacaatctcgcagaaaggcaaaatcatcgtcggaggaaaaggataaggaaactt |
33537611 |
T |
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| Q |
418 |
cttccgcaagaaagacctctagaactcgaaagtcgtctaaggctgattccttaactgatatccccttcacagatccagggccttcagctcaatagacacc |
517 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33537612 |
cttccacaagaaagacctctagaactcgaaagtcgtctaaggctgattccttaactgatatccccttcacagatccagggccttcagcccaatagacacc |
33537711 |
T |
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| Q |
518 |
tcttaagtgattaatagtgctctggcataaataatttcagttttagagagagatttcgagagcaggatatattttattcttctcttgtttatatt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33537712 |
tcttaagtgattaatagtgctctggcataaataatttcagttttagagagagatttcgagagcaggatatattttattcttctcttgtttatatt |
33537806 |
T |
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