View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_10 (Length: 421)
Name: NF19522_high_10
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 42959393 - 42959768
Alignment:
| Q |
19 |
attattcctcctctgatctgacttatcattttttcattctcttcaggccttcttccattcatatagaataatacaggacaagactattaaaacctttttc |
118 |
Q |
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| T |
42959393 |
attattcctcctctgatctgacttatcattttttcattctcttcaggccttcttccatccatatagaataataca-----agactattaaaccctttttc |
42959487 |
T |
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| Q |
119 |
caaatcaaaagtttcaaactctcatttgaacttgtcaattttcttcaacagttaagcagtttcagtttcggactctgtcaaacgcgtgtgggactaataa |
218 |
Q |
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| T |
42959488 |
caaatcaaaagtttcaaactctcatttgaacttgtcaattttcttcaacagttaagcggtttcagtttcggactctgtcaaacgcgtgtgggactaa--- |
42959584 |
T |
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| Q |
219 |
ataaaacaaccaacaggtaaatgcttaacatctttatactatttatttcatgctgtgtttcggaattttgatgaattgttgttgttggtgctgttttaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42959585 |
------------acaggtaaatgcttaacatctttatactatttatttcatgctgtgtttcggaattttgatgaatttttgttgttggtgctgttttaag |
42959672 |
T |
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| Q |
319 |
gtttcaaaatgttaggggatttcattactcgatgtcttatgtaagtatataactactttttccatttcttcttgtttccattttcttattcttctc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959673 |
gtttcaaaatgttaggggatttcattactcgatgtcttatgtaagtatataactactttttccatttcttcttgtttccattttcttattcttctc |
42959768 |
T |
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