View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_11 (Length: 394)
Name: NF19522_high_11
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 33224461 - 33224831
Alignment:
| Q |
9 |
gattatacttctagtatcaaatggacacagagtgcaataggataaagatggaaagcctataaatatagtttaaggtgtcactaatcactattatatccta |
108 |
Q |
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| T |
33224461 |
gattatacttctagtatcaaatggacacagagtgcaataggataaagatggaaagcctataaatatagtttaaggtgtcactaatcactattatatccta |
33224560 |
T |
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| Q |
109 |
acaaaagtaaagaacacatactttttaatcttctttctggtgtgccttctattctatgtattgattggacggtttttgttcatctaaatagaaatgggca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224561 |
acaaaagtaaagaacacatactttttaatcttctttctggtgtgccttctattctatgtattgattggacggtttttgttcatctaaatagaaatgggca |
33224660 |
T |
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| Q |
209 |
aatgaaggtatagatatacattgcagannnnnnnagaaagtgagcaaaatatatacaccgacattttacattgaaagagtataataatgact-aacatat |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33224661 |
aatgaaggtatagatatacattgcagatttttttagaaagtgagcaaaatatatacaccgacattttacattgaaagagtataataatgactaaacatat |
33224760 |
T |
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| Q |
308 |
taaaaaattatgcaaaataagtgagcaaattacaagaaagattaatgtctcgcatgctgggtgggggttgt |
378 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224761 |
taaaaaattatgcaaaataagtgagaaaattacaagaaagattaatgtctcgcatgctgggtgggggttgt |
33224831 |
T |
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