View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_12 (Length: 391)
Name: NF19522_high_12
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 43281362 - 43281744
Alignment:
| Q |
1 |
aaaatggatcaacaaaatttgatatatttaggagaaaatgttagtagaaaat-------gtta-------gtaatcatattaacataattaatccattgt |
86 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
43281362 |
aaaatggatcaacaaaagttgatgtatttaggagaaaatgttagtagcaaattagcatggttactccatggtaatcatattaacataattaatccattgt |
43281461 |
T |
|
| Q |
87 |
caacagacagatatgaaaacgcttaagcgagaattgaggcttagatagaagagacactttacatttagccttttaacttataccctaaaagcacaagtta |
186 |
Q |
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||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
43281462 |
caacagacaaatatgaaaacgcttaagcaaaaattgaggcttagatagaagagacactttacatttagccttttaacttatgccctaagagcacaagtta |
43281561 |
T |
|
| Q |
187 |
acatttttccttatttatttatattatacatctacctgtaagtgtttaactgttaatgctagcaaaatttagcttatgtgaaacactttagcgtataaat |
286 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43281562 |
acatttttcc----ttatttatattatacatctacctgtaagtgtttaactgttaatgctagcaaaacttagcttatgtgaaacactttagcgtataaat |
43281657 |
T |
|
| Q |
287 |
accagtcttgtacttgtagttccnnnnnnnntcctttgttaattaaaagtcaactttcgaattaaagagcatgtgtgactccacaag |
373 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43281658 |
accagtcttgtacttgtagttccaaaaaaaatcctttgttaattaaaagtcaactttcgaattaaagagcatgtgtgactccacaag |
43281744 |
T |
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