View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_27 (Length: 263)
Name: NF19522_high_27
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_27 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 54396765 - 54397027
Alignment:
| Q |
1 |
ttgaaataagcaggaacagtaacgacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaattt |
100 |
Q |
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| T |
54396765 |
ttgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaattt |
54396864 |
T |
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| Q |
101 |
cctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtc |
200 |
Q |
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| T |
54396865 |
cctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtc |
54396964 |
T |
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| Q |
201 |
gttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgtt |
263 |
Q |
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| T |
54396965 |
gttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgtt |
54397027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 251
Target Start/End: Complemental strand, 23587449 - 23587309
Alignment:
| Q |
111 |
aaatttcttctcttcacctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaact |
210 |
Q |
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| T |
23587449 |
aaattgcttctcttccgctttgtagttcaccacgatcattggtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtcgctctgtact |
23587350 |
T |
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| Q |
211 |
gattcatcggagaatctacgaccaattaaacgcttagcatc |
251 |
Q |
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| T |
23587349 |
gaaacatcgccaaatcgcctaccaattaatcgcttagcatc |
23587309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 17703654 - 17703613
Alignment:
| Q |
222 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgtt |
263 |
Q |
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| T |
17703654 |
gaatctacgaccaatcaacctcttagcatcgaagacggtgtt |
17703613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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