View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_high_9 (Length: 444)
Name: NF19522_high_9
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 26604256 - 26603848
Alignment:
| Q |
1 |
aggtcctcatacaacttgctctaagtctaagctattaaattgtgtttcaaattatggagtaatgtattgttagaaaaatgtaaaagtagaaagaataaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26604256 |
aggtcctcatacaacttgctctaagtctaagccattaaattgtgtttcaaattatggagtaatgtatcgttagaaaaatgtaaaagtagaaagaataaat |
26604157 |
T |
|
| Q |
101 |
cttattgtcgttaatggagatagatgcctgtttcaatatccatattccaagaacaaaaacaactcataagtgtaacatcaatgtcacaagtatgagcact |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26604156 |
cttattgtcgttaatggagatagatgcttgtttcaatatccatattctaagaacaaaaacaactcataagtgtaacatcaatgtcacaagtatgagcact |
26604057 |
T |
|
| Q |
201 |
tgaaacaagcgtgtttcaaaagactcggcaggtataaaaactcaaccaaacatatgcaaaagaattatctagagaaaaataaaaactattgcttcatata |
300 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26604056 |
tgaaacaagtgtgtttcaaaagactctgcaggtataaaaactcaaccaaacatatgcaaaagaattatctagagaaaaataaaaactattgcttcata-- |
26603959 |
T |
|
| Q |
301 |
gtccccatataaactctttgatttcgaggcttcaacattttgannnnnnnnctctagcaattcgcatactcctcaaaatgtgcacttgaagatttctcaa |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26603958 |
------------------tgatttcgaggcttcaacattttgattttttttctctagcaattcgcatactcctcaaaatgtgcacttgaagatttctcaa |
26603877 |
T |
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| Q |
401 |
ccttcatcttctaactcatttgatatttt |
429 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
26603876 |
ccttcatcttctaactcatttgatatttt |
26603848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 26611771 - 26611552
Alignment:
| Q |
1 |
aggtcctcatacaacttgctctaagtctaagctattaaattgtgtttcaaattatggagtaatgtattgttagaaaaatgtaaaagtagaaagaataaat |
100 |
Q |
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|
||||||||||||||||||| | |||||||||| | |||||||||||||||||||| |||||||| | ||| |||||| ||| || ||| |
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| T |
26611771 |
aggtcctcatacaacttgcaccaagtctaagccagtaaattgtgtttcaaattatccagtaatgtttcgttggaaaaa-----------aaataa--aat |
26611685 |
T |
|
| Q |
101 |
cttattgtcgttaatggagatagatgc--ctgtttcaatatccatattccaaga-acaaaaacaactcataagtgtaacatcaatgtcacaagtatgagc |
197 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26611684 |
cttattgtcgttaatggagatagatgcttttgtctcaa-atccatattctaagagaacaaaacaactcataagtgtaacatcaatgtcgcaagtatgagc |
26611586 |
T |
|
| Q |
198 |
acttgaaacaagcgtgtttcaaaagactcggcag |
231 |
Q |
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| T |
26611585 |
acttgaaacaaatgtgtttgaaaagactctgcag |
26611552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 26611524 - 26611455
Alignment:
| Q |
233 |
tataaaaactcaaccaaacatatgcaaaagaattatctagagaaaaataaaaactattgcttcatatagt |
302 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
26611524 |
tataaaaactcaaccaaacatatacaaaagaattatctagagaaaaacaaaaactattgcttcatatagt |
26611455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 26596576 - 26596445
Alignment:
| Q |
101 |
cttattgtcgttaatggagatagatgcct--gtttcaatatccatattcca-agaacaaaaacaactcataagtgtaacatcaatgtcacaagtatgagc |
197 |
Q |
| |
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||||||||||||||| ||||||||||| | || |||| |||||||||| | |||||||| |||||||||||||||||||||||||| |||||| ||| |
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| T |
26596576 |
cttattgtcgttaatagagatagatgcttttgtctcaa-atccatattctagagaacaaac-caactcataagtgtaacatcaatgtcttaagtataagc |
26596479 |
T |
|
| Q |
198 |
acttgaaacaagcgtgtttcaaaagactcggcag |
231 |
Q |
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|||||||||||| |||||| ||||||||| |||| |
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|
| T |
26596478 |
acttgaaacaagtgtgtttgaaaagactctgcag |
26596445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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