View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19522_low_18 (Length: 360)

Name: NF19522_low_18
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19522_low_18
NF19522_low_18
[»] chr6 (2 HSPs)
chr6 (1-340)||(30708026-30708364)
chr6 (3-144)||(30727353-30727494)
[»] chr2 (1 HSPs)
chr2 (276-338)||(34817580-34817642)
[»] chr7 (2 HSPs)
chr7 (226-312)||(47707914-47707999)
chr7 (276-312)||(11680097-11680133)
[»] chr8 (1 HSPs)
chr8 (276-337)||(34741744-34741805)
[»] chr5 (1 HSPs)
chr5 (276-339)||(6863592-6863655)
[»] chr4 (1 HSPs)
chr4 (276-321)||(2096925-2096970)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 30708364 - 30708026
Alignment:
Q  1 ggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30708364 ggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatgcacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacacc 30708265  T
Q  101 acaannnnnnngatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaaatagagagggtt 200  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30708264 acaatttttttgatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaaatagagagggtt 30708165  T
Q  201 tttatcatgtgtaaattcgtatacattaagaagtttaacatagtaatttctcattttaacttatctattttttacttaaatatataactttttaatggat 300  Q
    ||||| ||||||||||||| || | |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  30708164 tttattatgtgtaaattcgcattcgttaagaagtttaacatagtaatttttcattttaacttatatatttttta-ttaaatatataactttttaatggat 30708066  T
Q  301 aattgttgttttcaaataaaacttgatatttttagttact 340  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30708065 aattgttgttttcaaataaaacttgatatttttagttact 30708026  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 30727494 - 30727353
Alignment:
Q  3 tgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacaccac 102  Q
    |||||||  |||||||  ||||||||| |||||||||||||||||| | |||||||| || |||||||||||||| ||||||||| | ||||| |||  |    
T  30727494 tgcaatatcaaacttggatgaacttgaaggtcttggctgcaccatcttgcacgaagtagacgttcacaacatgaaacaacaccattatctcaagcacagc 30727395  T
Q  103 aannnnnnngatcgaataatctttaattttcctcattctggt 144  Q
    ||        ||||||||||||| ||||||||||||||||||    
T  30727394 aatgattttcatcgaataatcttcaattttcctcattctggt 30727353  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 34817642 - 34817580
Alignment:
Q  276 ttaaatatataactttttaatggataattgttgttttcaaataaaacttgatatttttagtta 338  Q
    |||||||||||||||||||||  |||||||||||||||||  || | ||||||||||||||||    
T  34817642 ttaaatatataactttttaataaataattgttgttttcaataaatagttgatatttttagtta 34817580  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 47707914 - 47707999
Alignment:
Q  226 ttaagaagtttaacatagtaatttctcattttaacttatctattttttacttaaatatataactttttaatggataattgttgtttt 312  Q
    ||||||||||||| ||||||||||   |||  |||||||  ||||| || |||||||||||||||||||||  ||||||||||||||    
T  47707914 ttaagaagtttaaaatagtaattttgaattgaaacttatacattttgta-ttaaatatataactttttaataaataattgttgtttt 47707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 11680097 - 11680133
Alignment:
Q  276 ttaaatatataactttttaatggataattgttgtttt 312  Q
    |||||||||||||||||||||  ||||||||||||||    
T  11680097 ttaaatatataactttttaataaataattgttgtttt 11680133  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 34741744 - 34741805
Alignment:
Q  276 ttaaatatataactttttaatggataattgttgttttcaaataaaacttgatatttttagtt 337  Q
    |||||||||||| ||||||||  |||||| |||||||||| ||||| ||| |||||||||||    
T  34741744 ttaaatatataattttttaataaataattattgttttcaattaaaagttgttatttttagtt 34741805  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 6863655 - 6863592
Alignment:
Q  276 ttaaatatataactttttaatggataattgttgttttcaaataaaacttgatatttttagttac 339  Q
    ||||||||||||||||||| |  |||||||||| ||||||  |||||||| || ||||||||||    
T  6863655 ttaaatatataactttttattaaataattgttggtttcaataaaaacttgctacttttagttac 6863592  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 2096970 - 2096925
Alignment:
Q  276 ttaaatatataactttttaatggataattgttgttttcaaataaaa 321  Q
    |||||||||||||||||||||  ||||||||||||||  |||||||    
T  2096970 ttaaatatataactttttaataaataattgttgtttttcaataaaa 2096925  T

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