View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19522_low_19 (Length: 345)

Name: NF19522_low_19
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19522_low_19
NF19522_low_19
[»] chr4 (4 HSPs)
chr4 (18-335)||(54396483-54396800)
chr4 (20-334)||(23587525-23587839)
chr4 (20-334)||(23596377-23596691)
chr4 (260-334)||(35132750-35132824)
[»] chr7 (20 HSPs)
chr7 (20-334)||(8102729-8103043)
chr7 (20-335)||(8017204-8017519)
chr7 (20-334)||(39985708-39986022)
chr7 (264-334)||(7877525-7877595)
chr7 (213-334)||(8602229-8602350)
chr7 (214-334)||(8590894-8591014)
chr7 (260-331)||(17260543-17260614)
chr7 (260-334)||(10494166-10494240)
chr7 (264-325)||(8382677-8382738)
chr7 (21-82)||(8581763-8581824)
chr7 (288-331)||(6789842-6789885)
chr7 (260-334)||(3147574-3147648)
chr7 (201-331)||(8585501-8585631)
chr7 (264-334)||(8636135-8636205)
chr7 (260-334)||(13333248-13333322)
chr7 (21-82)||(8570374-8570435)
chr7 (291-331)||(1301797-1301837)
chr7 (21-85)||(8609980-8610044)
chr7 (35-99)||(8628609-8628673)
chr7 (291-335)||(8659696-8659740)
[»] chr2 (9 HSPs)
chr2 (198-334)||(17716485-17716621)
chr2 (123-256)||(5445621-5445754)
chr2 (265-334)||(12234996-12235065)
chr2 (267-334)||(12245198-12245265)
chr2 (288-332)||(7542556-7542600)
chr2 (20-67)||(17648100-17648147)
chr2 (20-67)||(17666742-17666789)
chr2 (264-334)||(16657309-16657379)
chr2 (19-67)||(17705797-17705845)
[»] chr1 (1 HSPs)
chr1 (264-335)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 54396483 - 54396800
Alignment:
Q  18 gaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396483 gaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaa 54396582  T
Q  118 gaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396583 gaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagc 54396682  T
Q  218 agcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396683 agcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaaca 54396782  T
Q  318 gtaacaacagcattcttc 335  Q
    ||||||||||||||||||    
T  54396783 gtaacaacagcattcttc 54396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 23587839 - 23587525
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 119  Q
    ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |||||||| || || ||||| ||||| |||||||||||     
T  23587839 aacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttgacctcaaagataccttcctcaatagtaagt 23587740  T
Q  120 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 219  Q
    || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| |||||||    
T  23587739 agggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtagctttcttatcaagaccataagcaatagcagcag 23587640  T
Q  220 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 319  Q
    | ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||||||||| ||||| ||||| |||||||| |||||    
T  23587639 cggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagt 23587540  T
Q  320 aacaacagcattctt 334  Q
     ||||| ||||||||    
T  23587539 tacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 23596691 - 23596377
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 119  Q
    ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||||||| || ||||| ||||| ||||||||||||    
T  23596691 aacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagctttcacctcaaagataccttcctcaatagtaaga 23596592  T
Q  120 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 219  Q
    || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |||||||||||| | |||||||||||| || ||||    
T  23596591 agtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtagctttcttatcaagaccataagcaatagcggcag 23596492  T
Q  220 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 319  Q
    |||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||||||||| ||||| ||||| || ||||| || ||    
T  23596491 cagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggt 23596392  T
Q  320 aacaacagcattctt 334  Q
     ||||| ||||||||    
T  23596391 tacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  260 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 8102729 - 8103043
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 119  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| || || || |||||||||||||||    
T  8102729 aacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagccttaacttcaaatataccctcttcaatagtaaga 8102828  T
Q  120 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 219  Q
    || || ||||| ||||| ||||| ||||| ||||| || | ||||||||  || ||    || |  || || || || | ||| || ||||| |||||||    
T  8102829 agtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgtcgcctttttgtcaagaccgtaggcaatagcagcag 8102928  T
Q  220 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 319  Q
    |||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || |||||||| |||||||||||||| |||||||| |||||    
T  8102929 cagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagt 8103028  T
Q  320 aacaacagcattctt 334  Q
     || || ||||||||    
T  8103029 gacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 8017519 - 8017204
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 119  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| || || || |||||||||||||||    
T  8017519 aacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagccttaacttcaaaaataccctcttcaatagtaaga 8017420  T
Q  120 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 219  Q
    ||||| ||||| ||||| ||||||||||||||||| || | ||| ||||  |||||    || | ||| || || || |  || || ||||| || ||||    
T  8017419 agagacacatcaaaagtaccacctcccaagtcaaagatcaacacattcttctcgccaacacttgtagcctttttgtcaagtccgtacgcaatagctgcag 8017320  T
Q  220 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 319  Q
    | || ||||| || ||||| ||||| ||||| |  || | |||  |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| ||    
T  8017319 ctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgt 8017220  T
Q  320 aacaacagcattcttc 335  Q
    |||||| |||||||||    
T  8017219 aacaacggcattcttc 8017204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 39985708 - 39986022
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 119  Q
    |||||| || |||||||||||||| |||||||| ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||||| ||     
T  39985708 aacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagc 39985807  T
Q  120 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 219  Q
    | ||| ||||| ||||| ||||| || | |||||| || |  || ||||  || ||    || |  |||||||| || | |||||||||||| |||||||    
T  39985808 aaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcag 39985907  T
Q  220 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 319  Q
    |||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || ||||||||||| || || ||||| || |||||||| |||||    
T  39985908 cagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagt 39986007  T
Q  320 aacaacagcattctt 334  Q
    |||||||||||||||    
T  39986008 aacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  264 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  213 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 312  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  313 gaacagtaacaacagcattctt 334  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  214 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 313  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  314 aacagtaacaacagcattctt 334  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  260 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 331  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 10494240 - 10494166
Alignment:
Q  260 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  264 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 325  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 8581763 - 8581824
Alignment:
Q  21 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 82  Q
    ||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581763 acaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  288 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 331  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  260 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  201 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 300  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  301 tgaaataagcaggaacagtaacaacagcatt 331  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  264 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 13333322 - 13333248
Alignment:
Q  260 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 8570374 - 8570435
Alignment:
Q  21 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 82  Q
    ||||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570374 acaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  291 tgagaatcattgaaataagcaggaacagtaacaacagcatt 331  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  21 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 85  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  35 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 99  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 8659696 - 8659740
Alignment:
Q  291 tgagaatcattgaaataagcaggaacagtaacaacagcattcttc 335  Q
    |||||||||||||| || ||||| || ||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttc 8659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  198 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 297  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  298 cattgaaataagcaggaacagtaacaacagcattctt 334  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 256
Target Start/End: Complemental strand, 5445754 - 5445621
Alignment:
Q  123 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 222  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  223 taggctcattaataatcctcaacacattcaaacc 256  Q
    ||||||| || || ||||||| |||||| |||||    
T  5445654 taggctcgttgatgatcctcatcacattaaaacc 5445621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 12234996 - 12235065
Alignment:
Q  265 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  267 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 7542556 - 7542600
Alignment:
Q  288 cgttgagaatcattgaaataagcaggaacagtaacaacagcattc 332  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 67  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  20 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 67  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  264 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 334  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17705845 - 17705797
Alignment:
Q  19 aaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 67  Q
    ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705845 aaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 4678420 - 4678349
Alignment:
Q  264 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttc 335  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttc 4678349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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