View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_2 (Length: 585)
Name: NF19522_low_2
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 23 - 579
Target Start/End: Original strand, 36167531 - 36168109
Alignment:
| Q |
23 |
atgaccctataatgataattagacgatgatatgtgaatcaacaccatgctctctagatctcataaaattctcacaaacttaaacgttggagcccccaaat |
122 |
Q |
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| T |
36167531 |
atgaccctataatgataattagacgatgatatgtgaattaacaccatgctctctaggtctcataaaattctcactaacttaagcgttggagcccccaaat |
36167630 |
T |
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| Q |
123 |
cagggttggctcaagggtaaggcctaaaacgaaaatgataaaatatttttcattagttttacatgcaaaaatgtcttatagtcgaataagaaaaacccca |
222 |
Q |
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| T |
36167631 |
tagggttggcttaagggcaaggcctaaaacgaaaatgataaaatatttttcattagttttacatgcaaaaatgtcttatagtcgaataagaaaaacccca |
36167730 |
T |
|
| Q |
223 |
tatattcaaaattggtttagagttcggttacttttaaaagttattgggtcggccctgccctgaatgatctcttaaaatccaacattatttacgcgtcatt |
322 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
36167731 |
tatattcaaaattgttttagagttcggttacttttaaaagttattgggtcggccttgccctgaatgacctcttaaaatccaacattatttatgcgtcatt |
36167830 |
T |
|
| Q |
323 |
tatataaaagt----------------------attcttaagtttggttagatatccgactctcgtaaactctcactaacttgaacgttgaagttcttac |
400 |
Q |
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| T |
36167831 |
tatataaaagtttttaacccttggtaaaggtacattcttaagtttggttagatatccgactctcgtaaactctcactaatttgaacgttgaagttcttac |
36167930 |
T |
|
| Q |
401 |
atgtaaattctttggagaataacgatgtccacattcaaccaaccttcttctatcgtcgtattcaggttaactcttgatcacttggaatactcaaattata |
500 |
Q |
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| T |
36167931 |
atgtaaattctctggagaataacgatgtccgcattcaaccaaccttcttcgatcgtcatattcaggttaaatcttgatcatttggaatactcaaattata |
36168030 |
T |
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| Q |
501 |
cactattcttttagatttgaaccatagattttttcttcgatatataaatgcaagatacacactttcttgagaattatct |
579 |
Q |
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| T |
36168031 |
tactattcttttagatttgaaccatggattttttcttcgatatataaatgcaagatacacactttcttaagaattatct |
36168109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 38703590 - 38703470
Alignment:
| Q |
155 |
aaatgataaaatatttttcattagtt-ttacatgcaaaaatgtcttatagtcgaataagaaaaaccccatatattcaaaattggtttagagttcggttac |
253 |
Q |
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|||| ||||| |||||||||||| | ||||| |||||| | |||||||||||| || || | || |||||||||||||||| |||| | ||| |||| |
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| T |
38703590 |
aaataataaattatttttcattaaatattacaagcaaaatggccttatagtcgaacaaaaatagcctcatatattcaaaattgttttaaatttcacttac |
38703491 |
T |
|
| Q |
254 |
ttttaaaagttattgggtcgg |
274 |
Q |
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| T |
38703490 |
ttttaaaaattattaggtcgg |
38703470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 7988984 - 7988883
Alignment:
| Q |
179 |
ttttacatgcaaaaatgtcttatagtcgaataagaaaaa-ccccatatattcaaaat-tggtttagagttcggttacttttaaaagttattgggtcggcc |
276 |
Q |
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||||||| ||||||| | || ||||||||| || ||||| |||||||||||||||| || ||||| |||| |||||||||||| |||||||||||| | |
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| T |
7988984 |
ttttacaagcaaaaaggcctcatagtcgaacaaaaaaaaaccccatatattcaaaaactgctttaggcttcg-ttacttttaaaaattattgggtcggtc |
7988886 |
T |
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| Q |
277 |
ctg |
279 |
Q |
| |
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||| |
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| T |
7988885 |
ctg |
7988883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 7584592 - 7584680
Alignment:
| Q |
155 |
aaatgataaaatatttttcattag-ttttacatgcaaaaatgtcttatagtcgaataagaaaaaccccatatattcaaaattggtttag |
242 |
Q |
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|||| |||||||||||||||| | ||||||| ||||||||| |||| ||||||| || | ||||||||||||||||| || ||||| |
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| T |
7584592 |
aaataataaaatatttttcatcaaattttacaagcaaaaatgccttagagtcgaacaaacatgaccccatatattcaaaactgctttag |
7584680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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