View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_29 (Length: 249)
Name: NF19522_low_29
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 33951340 - 33951540
Alignment:
| Q |
32 |
agtaaagaatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcag |
131 |
Q |
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| T |
33951340 |
agtaaagaatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcattgattgcag |
33951439 |
T |
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| Q |
132 |
atagtttgtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggctattccctgcaaatgacgatt |
231 |
Q |
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| T |
33951440 |
atagtttgtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggctattccctgcaaatgacgatt |
33951539 |
T |
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| Q |
232 |
t |
232 |
Q |
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| T |
33951540 |
t |
33951540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 33973935 - 33974113
Alignment:
| Q |
32 |
agtaaagaatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcag |
131 |
Q |
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| T |
33973935 |
agtaaagaatggatggaaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagcggtattcatgctcgctgattgtag |
33974034 |
T |
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| Q |
132 |
atagtttgtccttagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggc |
210 |
Q |
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| T |
33974035 |
atagtttgtccttagagaatattatgtttaggagcagttcattattttccaaattacatcataggaaaacattgtaggc |
33974113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 48 - 210
Target Start/End: Original strand, 33990867 - 33991032
Alignment:
| Q |
48 |
aaataaggacataagaattttttcatataaatatttcttatgtgtagagcagcttaaagctgtattcattctcactgattgcagatagt----ttgtcct |
143 |
Q |
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| T |
33990867 |
aaataaggaaataagaatttttt-atataaatatttcttgtgtgtagagcagcttaaagcggtattcatgctcgctgattgtagatagttagtttgtcct |
33990965 |
T |
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| Q |
144 |
tagagaatattatgtttaggagcggttcattattttccaaattacatcataggaaaacattgtaggc |
210 |
Q |
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| T |
33990966 |
tagagaatattatgtttaggagccgttcattattttccaaattacatcataggaaaacattgtaggc |
33991032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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