View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19522_low_3 (Length: 576)
Name: NF19522_low_3
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 6 - 558
Target Start/End: Original strand, 28470769 - 28471322
Alignment:
| Q |
6 |
agaaaataaaaacaaacatcaaaccagcataaaaagaattaatggaggtaagaaaaagttttttacaattactcactcaaattacaaaccatgaagatgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28470769 |
agaaaataaaaacaaacatcaaaccagcataaaaagaattaatgaaggtaagaaaaagttttttacaattattcactcaaattacaaaccatgaagatgt |
28470868 |
T |
|
| Q |
106 |
tcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatttgttctgtaaacaatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28470869 |
tcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatttgttctgtaaacaatg |
28470968 |
T |
|
| Q |
206 |
cttcaaacacaaaaacc-agatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaatacaccattgcttcta |
304 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28470969 |
cttcaaacacaaaaacccagatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaagacaccattgcttcta |
28471068 |
T |
|
| Q |
305 |
agatccttgtaaatatccatgcatctctctctttcaccatcttcactctctgagcagctaagaaacaactcatcaacaaagcatataacaccatttttat |
404 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28471069 |
agacccttgtaaatatccatgcatctctctctttcaccatcttcactctctgagcagctaagaaacaactcatcaacaaagcatataacaccatttttat |
28471168 |
T |
|
| Q |
405 |
atatttctgaaagaaaattcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagtttctttaaaccaagcaaccaa |
504 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28471169 |
atatttctgaaagaaacttcatttcaactttccctgcaatattcatcttaaccataacaaaatcagcattctccacagtttctttaaaccaagcaaccaa |
28471268 |
T |
|
| Q |
505 |
atcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttc |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28471269 |
atcaaactcttcatcttctttcacatctgcttccccgacattaaccttagcttc |
28471322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 40806931 - 40806875
Alignment:
| Q |
460 |
aacaaaatcagcattctccacagtttctttaaaccaagcaaccaaatcaaactcttc |
516 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
40806931 |
aacaaaatcagcatattgcacagtttctttgaaccaagcaaggaaatcaaactcttc |
40806875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University