View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_31 (Length: 245)
Name: NF19522_low_31
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 10918667 - 10918877
Alignment:
| Q |
17 |
atcaaataaattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacgtttttagaatcaatc-nnnnnnnn |
115 |
Q |
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| T |
10918667 |
atcaaataaattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacatttttaaaatcaatcaaaaagaag |
10918766 |
T |
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| Q |
116 |
nnnnnnnnnnnnngatattttttaaatccatgtattttactcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttaga |
215 |
Q |
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| T |
10918767 |
aaaacaaaaaaaagatattttttaaatccatgtattttactcacggcagccataatgtttctggaaaaacccatcgacaaagacgattgaccttcttaga |
10918866 |
T |
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| Q |
216 |
atgcacgattt |
226 |
Q |
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| T |
10918867 |
atgcacgattt |
10918877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 43958553 - 43958624
Alignment:
| Q |
155 |
ctcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacgattt |
226 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||||||| |
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| T |
43958553 |
ctcactgcagccatgatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaattcacgattt |
43958624 |
T |
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