View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_4 (Length: 551)
Name: NF19522_low_4
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 247 - 532
Target Start/End: Original strand, 36134619 - 36134912
Alignment:
| Q |
247 |
ccccatctttttccatttggtgattatgctctgtgggaacaccagttgttttgcaactcaacttatcttcttataaagatccaggacatatttcctatga |
346 |
Q |
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| T |
36134619 |
ccccatctttttccatttggtgattatgctctgtgggaacaccagttgttttgcaactcaacttatcttcttataaagatccaggacatatttcctatga |
36134718 |
T |
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| Q |
347 |
aagatgaagataaatttcctagagtagacaacctctatgccgtggaagtacttcaacc--------tccttcattttgaactaagctgctaacttatccc |
438 |
Q |
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| T |
36134719 |
aagatgaagataaatttccaagagtagacaacctctatgccgtggaagtacttcaacctcctgtggtccttcattttgaactaagctgctaacttatccc |
36134818 |
T |
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| Q |
439 |
ctaaaaatctgtttttctacttcatcagcctgtctaaattatattaaattgattccatatacaaaaatgaaaccaatatatactatgagcagta |
532 |
Q |
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| T |
36134819 |
ctaaaaatctgtttttctacttcatcagcctgtctaaattatattaaattgattccatatacaaaaatgaaaccaatatatactatgagcagta |
36134912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 36133259 - 36133070
Alignment:
| Q |
9 |
caatagatgaaattaaaagttaactttacgacttaagattttcttctaggct-------------tgtaactcatcaatttttccaccagtatcagcaac |
95 |
Q |
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| T |
36133259 |
caatagatgaaattaaaagttacctttccgccttaagattttcttctaggctagcaacacactcttgtaactcatccatttttccacctgtatcagcaac |
36133160 |
T |
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| Q |
96 |
agctagcttcgtagccttctctttccatcttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa |
185 |
Q |
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| T |
36133159 |
agctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa |
36133070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 382 - 532
Target Start/End: Original strand, 30814942 - 30815099
Alignment:
| Q |
382 |
tatgccgtggaagtacttcaacctcct--------tcattttgaactaagctgctaacttatcccctaaaaatctgtttttctacttcatcagcctgtct |
473 |
Q |
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| T |
30814942 |
tatgccgtggaagtacttcaacctcctgcggtccttcattttgaactaagctgccaacttatccc-tcaaaatctgtttttcttcttcatcagcctgtcc |
30815040 |
T |
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| Q |
474 |
aaattatattaaattgattccatatacaaaaatgaaaccaatatatactatgagcagta |
532 |
Q |
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| T |
30815041 |
aaattatattaaattgattccatatgcacaaatggagccaatatattctacgagcagta |
30815099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 30813549 - 30813423
Alignment:
| Q |
59 |
cttgtaactcatcaatttttccaccagtatcagcaacagctagcttcgtagccttctctttccatcttaagagagataactctttaagcatgtacgcttc |
158 |
Q |
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||||||||||||| |||||||| || |||||| ||||||||||| | ||||||||||||| |||| | || |||||||||||||| |||||||| ||||| |
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| T |
30813549 |
cttgtaactcatccatttttccccctgtatcatcaacagctagcgttgtagccttctcttgccatttcaacagagataactctttgagcatgtatgcttc |
30813450 |
T |
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| Q |
159 |
tgcttcattcttcacatcctgtttcaa |
185 |
Q |
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| T |
30813449 |
tgcttcattcttcacatcctgtttcaa |
30813423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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