View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_5 (Length: 544)
Name: NF19522_low_5
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 50141244 - 50141747
Alignment:
| Q |
19 |
catctatctatcgttgagatgagattatgccgtaggaccataaactaaagctaaatataggcaaaggtgagtgagtggacggtgtgtatgtgagctttgt |
118 |
Q |
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| T |
50141244 |
catctatctatcgttgagatgagattatgccgtaggaccataaactaaagctaaatataggcaaaggtgagtg----gacggtgtgtatgtgagctttgt |
50141339 |
T |
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| Q |
119 |
ccttttttgcatacatagataaacatggatattggaattgattgggttaggccatcgctttgttaggttccaaaattatttatctcgtgcatgatagaag |
218 |
Q |
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| T |
50141340 |
ccttttttgcatacatagataaacatggatattggaattgattgggttaggccatcgctttgttaggttccaaaattatttatctcgtgcatgatagaag |
50141439 |
T |
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| Q |
219 |
catagacacgagttcatggacaaatattgattgatgggaatattattgctgttggatgcgtggggttggggggtaaatggaaaaggaccctttttctcta |
318 |
Q |
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| T |
50141440 |
catagacacgagttcatggagaaatattgattgatgggaatattattgctgttggatgcgtggggttggggggtaaatagaaaaggaccctttttctcta |
50141539 |
T |
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| Q |
319 |
caaaataattccatagcaaggaacatatgtgtacgaaaagaagaggaccaacaacatcaccaattaagaagaatcaaaaattttttgggtggaaaattaa |
418 |
Q |
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| T |
50141540 |
caaaataattccatagcaaggaacatatgtgtacgaaaagaagaggaccaacaacatcaccaattaagaa---tcacattttttttgggtggaaaattaa |
50141636 |
T |
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| Q |
419 |
gaatcacactttatcaaagtgatttctaaaatttatatgtctatgaatataagcttcttttggaaagaattgtgtcattgaatatgagttttgttttaat |
518 |
Q |
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| T |
50141637 |
gaatcacactttatcaaagtgatttctaaaatttatatgtctatgaatataagcttcttttggaaagaattgtgtcattgaatatgagttttgttttaat |
50141736 |
T |
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| Q |
519 |
tgtttagacat |
529 |
Q |
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| T |
50141737 |
tttttagacat |
50141747 |
T |
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