View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19522_low_7 (Length: 485)
Name: NF19522_low_7
Description: NF19522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19522_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 469
Target Start/End: Complemental strand, 11892565 - 11892105
Alignment:
| Q |
9 |
gataatacttattttaacaaacacaacagggtacaatacaaaaaatcctcaataaaaataaagttatcatacagggaaatatcaatctatgcacatataa |
108 |
Q |
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| T |
11892565 |
gataatacttattttaacaaacacaacagggtacaatacaaaaaatcctcaataaaaataaagttatcatacagggaaatatcaatctatgcacatataa |
11892466 |
T |
|
| Q |
109 |
atcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagatggccatcaaataa |
208 |
Q |
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| T |
11892465 |
atcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagatggccatcaaataa |
11892366 |
T |
|
| Q |
209 |
tttggacagaaagctagttgtttcactttgctccaaatggacgactttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgatta |
308 |
Q |
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| T |
11892365 |
tttggacagagagctagttgtttcactttgctccaaatggacgactttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgatta |
11892266 |
T |
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| Q |
309 |
gtacataaaatttaaacatgtgatatgtgtgtgtatgggtgggaaaagatgcaagtgttatgattgcaacaatggtaaacttacataatttatcaccaat |
408 |
Q |
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| T |
11892265 |
gtacataaaatttaaacatgtgatatgtgtgtgtatgggtgggaaaagatgcaagtgttatgattgcaataatggtaaacttacataatttatcaccaat |
11892166 |
T |
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| Q |
409 |
ggtgatttggtgttgtgaggctagttgtagattggtggtggtggagaagcatagatgtaag |
469 |
Q |
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| T |
11892165 |
ggtgatttggtgttgtgaggctagttgtagattggtggtggtggagaagcatagatgtaag |
11892105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 11906164 - 11906052
Alignment:
| Q |
93 |
atctatgcacatataaatcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaa |
192 |
Q |
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| T |
11906164 |
atctatgcacaaataaatcaaagagatcacaaataaattaatatcgcttccacttcttgatttgtctttcacttgaacccaataagattagaaagtgcaa |
11906065 |
T |
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| Q |
193 |
gatggccatcaaa |
205 |
Q |
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||||||| ||||| |
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| T |
11906064 |
gatggccgtcaaa |
11906052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 461
Target Start/End: Complemental strand, 11905929 - 11905724
Alignment:
| Q |
253 |
ctttattccttgatgaaaactagaacctgaaaacaaataagagtttttgttgattagtacataaaatttaaacatgtgatatgtgtgtgtatgggtggga |
352 |
Q |
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| T |
11905929 |
ctttattccttggtgaaagctagaacctgaaaacaaatacaaattttagttgattatcacataagatttaaacgtgttatctgtgtatgcatgggtggcg |
11905830 |
T |
|
| Q |
353 |
aaagatgcaagtgttatgattgcaacaatggtaaacttacataatttatcaccaatggtgatttggtgttgtgaggctagttgtagattggtggtggtgg |
452 |
Q |
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| T |
11905829 |
tgcca--catatgttatgaatgtaata-tggtaaacttacatgatttatcatcaatggtgctttggtgttccgagattaatggtagatgggtggtggtgg |
11905733 |
T |
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| Q |
453 |
agaagcata |
461 |
Q |
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| T |
11905732 |
agaagcata |
11905724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 11883348 - 11883239
Alignment:
| Q |
96 |
tatgcacatataaatcaaagagataataaataaattaatctcgcttccacattttgattagccagtcacttgaacacaataagattaggaagtgcaagat |
195 |
Q |
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| T |
11883348 |
tatgcacaaataaatcaaagagatcacaaataaattaatctcgcttctcccttttgatttgtctgtcacttgaatagactaagaccaggaagtgcaagat |
11883249 |
T |
|
| Q |
196 |
ggccatcaaa |
205 |
Q |
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|||| |||| |
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| T |
11883248 |
tgccaccaaa |
11883239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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