View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19523_high_1 (Length: 679)
Name: NF19523_high_1
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 1 - 664
Target Start/End: Original strand, 49311921 - 49312584
Alignment:
| Q |
1 |
cagagagcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatgacaat |
100 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
49311921 |
cagaaagcccaaattgacgtcgactgcaaaggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatggcagt |
49312020 |
T |
|
| Q |
101 |
aaagactaaagaattgcattcaagagatttcatgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49312021 |
aaagactaaagaattgcatttaagagatttcatgctatgacacacatacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaa |
49312120 |
T |
|
| Q |
201 |
tcatctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaattactc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
49312121 |
tcatctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcgactgtttcaggatcatcacctctagaaattactc |
49312220 |
T |
|
| Q |
301 |
taccagcaaacaatactccatttggatcaagcacctttgccatttcagttgcgtatagcttgtttcccatagtgtaaagatgcatctcaaagagtttact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49312221 |
taccagcaaacaatactccatttggatcaagcacctttgccatttcagttgcgtatagcttgtttcccatagtgtaaagatgcatctcaaagagtttact |
49312320 |
T |
|
| Q |
401 |
agcctgtttagcattaacgagagatgtgaattttcgatacaaaattaagcctggtgcaatatcatacctaaaacattatataaaattaatattaccttct |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49312321 |
agcctgtttagtattaacgagagatgtgaattttcgatacaaaattaagcctggtgcaatatcatacctaaaacattatataaaattaatattaccttct |
49312420 |
T |
|
| Q |
501 |
ccaggaagttccagactcctggtctgagtttagtccacattcccatatgtggaagacgaaaaagatgtctccgaggctttccacgctcttgtttttcttt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49312421 |
ccaggaagttccagactcctggtctgagtttagtccacattcccatatgtggaagacgaaaaagatgtctccgaggctttccacgctcttgtttttcttt |
49312520 |
T |
|
| Q |
601 |
ctttctcaatatcttatcatgctcaggatcaacttccacaaactgaaagacaaaatgttaataa |
664 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49312521 |
ctttctcaatatcttatcatgctcaggatcaacttccacaaactgaaagacaaaatgttaataa |
49312584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 6 - 664
Target Start/End: Original strand, 29913358 - 29914016
Alignment:
| Q |
6 |
agcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatgacaataaaga |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29913358 |
agcccaaattgacgtcgactacaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaactaatgacagtaaaga |
29913457 |
T |
|
| Q |
106 |
ctaaagaattgcattcaagagatttcatgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaatcatc |
205 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||| ||| |
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|
| T |
29913458 |
ctaaataatttcatttaagagatttcatgctatgacacacgtacctctctaccgttataaggttcagttggttatgaggttagactcttggagaataatc |
29913557 |
T |
|
| Q |
206 |
tataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaattactctacca |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29913558 |
tataattacaacagatgattccaaacccaaaatgccttccaaatctttgcatttagtatcgactgtttcaggatcatcacctctagaaattactctacca |
29913657 |
T |
|
| Q |
306 |
gcaaacaatactccatttggatcaagcacctttgccatttcagttgcgtatagcttgtttcccatagtgtaaagatgcatctcaaagagtttactagcct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29913658 |
gcaaacaatactccatttggatcaagcacctttgccatttcagttgcgtatagcttgtttcccatagtgtaaagatgcatctcaaagagtttactagcct |
29913757 |
T |
|
| Q |
406 |
gtttagcattaacgagagatgtgaattttcgatacaaaattaagcctggtgcaatatcatacctaaaacattatataaaattaatattaccttctccagg |
505 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| || |
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|
| T |
29913758 |
gtttagtactaaggagagatgtgaattttcgatacaaaattaagcatgatgcaatatcatacctaaaacatgatataaaattagtattaccttctcctgg |
29913857 |
T |
|
| Q |
506 |
aagttccagactcctggtctgagtttagtccacattcccatatgtggaagacgaaaaagatgtctccgaggctttccacgctcttgtttttctttctttc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
29913858 |
aagttccagactcctggtctgagtttagtccacattcccatatgtggaagacgaaaaagatgtctctgaggctttccatgctcttgtttttctttctttc |
29913957 |
T |
|
| Q |
606 |
tcaatatcttatcatgctcaggatcaacttccacaaactgaaagacaaaatgttaataa |
664 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29913958 |
tcaatagcttatcatgctcaggatcaacttccacaaactgaaagacaaaatgttaataa |
29914016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 664
Target Start/End: Original strand, 6659613 - 6660272
Alignment:
| Q |
6 |
agcccaaattgacgtcgactgcaagggaagtatatgtacctgcaatatcttaaaacttaataaagggataatgattccactcaac--taatgacaataaa |
103 |
Q |
| |
|
|||||||||||||| | || || ||||||||| |||||||||||||||||||||||||||| || || |||| || |||||| |||| ||| |||| |
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| T |
6659613 |
agcccaaattgacgcctgctacatgggaagtatgtgtacctgcaatatcttaaaacttaatacagagagaatgcatcaactcaaaaataataacagtaaa |
6659712 |
T |
|
| Q |
104 |
gactaaagaattgcattcaagagattt-catgctatgacacacgtacctctccaccgttataaggttcagttggttatgaggccagactcttggtgaatc |
202 |
Q |
| |
|
|||||||||||||| | |||||| || ||||||| || || |||| || ||| |||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
6659713 |
gactaaagaattgcttgtaagagaattgcatgctacga---actgacctttcaaccactataaggttcagtttgttatgaggccagactctcacagaatc |
6659809 |
T |
|
| Q |
203 |
atctataattacaacagatgattccagacccaaaacgccttccaaatctttgcatttaatatcaactgtttcaggatcatcacctctagaaattactcta |
302 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||| |||||| |
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|
| T |
6659810 |
gtctataattacaacagacgattccatacccaaaacgccttccaaatctttgcttttagtatcagctgtttcagcatcatcacctctagaaataactcta |
6659909 |
T |
|
| Q |
303 |
ccagcaaacaatactccatttggatcaagcacctttgccatttcagttgcgtatagcttgtttcccatagtgtaaagatgcatctcaaagagtttactag |
402 |
Q |
| |
|
|| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
6659910 |
ccggcaaacagtactccctttggatcaagcacctttgccatttcagttgcatatagtttgtttcccatagtgtaaagatgcatctcaaagagtttaccag |
6660009 |
T |
|
| Q |
403 |
cctgtttagcattaacgagagatgtgaat-tttcgatacaaaattaagcctggtgcaatatcatacctaaaacattatataaaattaatattaccttctc |
501 |
Q |
| |
|
||||| ||||| | || |||||||||| || ||||||||||||||||||| ||||||||||||||| | | |||||||||| ||||||||||||| |
|
|
| T |
6660010 |
cctgtaaagcatcagggaaagatgtgaatgctttgatacaaaattaagcctggaacaatatcatacctaacataaaatataaaatttatattaccttctc |
6660109 |
T |
|
| Q |
502 |
caggaagttccagactcctggtctgagtttagtccacattcccatatgtggaagacgaaaaagatgtctccgaggctttccacgctcttgtttttctttc |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||| |||| || ||||||| |
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|
| T |
6660110 |
caggaagttccagactcctggtctgagtttagtccacattcccatatgaggaaaacgaaaaagatgtctctgaggcttttcacggtcttcttgttctttc |
6660209 |
T |
|
| Q |
602 |
tttctcaatatcttatcatgctcaggatcaacttccacaaactgaaagacaaaatgttaataa |
664 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
6660210 |
tttctcaacatctcatcatgcacaggatcaacttcgacaaactgaaagacagaaggttaataa |
6660272 |
T |
|
Back To:
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