View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_high_12 (Length: 242)
Name: NF19523_high_12
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23368755 - 23368538
Alignment:
| Q |
1 |
ttataagcataaaaataatttaatgtcttactgccagaaggaacaatttcaatgttcgtaatgttggatagcggacttctttgtaaggttattggttgag |
100 |
Q |
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| T |
23368755 |
ttataagcataaaaataatttaatgtcttactgccagaaggaacatattcaatgttcgtaatgttggatagcggacttctttgtaaggttattggttgag |
23368656 |
T |
|
| Q |
101 |
atgattctgccaccttcctcttgcacaaaatggtatgatttagtgttgatggaactgttaaaatattatcttagtatgtcaatgattaaaatatgtaagt |
200 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23368655 |
atga------caccttcctcttgcacaaaatggtatgacttagtgttgatggaactgttaaaatattatcatagtatgtcaatgattaaaatatgtaagt |
23368562 |
T |
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| Q |
201 |
gtgagtccaatcttgcagattaag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
23368561 |
gtgagtccaatcttgcagattaag |
23368538 |
T |
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