View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19523_high_4 (Length: 449)
Name: NF19523_high_4
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 41915423 - 41915740
Alignment:
| Q |
16 |
ctggttgttggagttcaaactcaaattctcttcgttgctcgtatgagtttttagatgatgtttctcatactgtctcgatgactatagactaaatttgaat |
115 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41915423 |
ctggttgtttggattcaaactcaaattctctttgttgctcgtatgagtttttagatgatgtttttcattctgtctcgatgactatagactaaatttgaat |
41915522 |
T |
|
| Q |
116 |
atttcatttatatatatnnnnnnnnnnnnnntgaatgataacaaaatattaactatatgccactaattgataacattatagttttacaataaataaaaat |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41915523 |
atttcatttatatatataaaaaaaaaaaa--tgaatgataacaaaatattaactatatgccactaattgataacattatagttttaaaataaataaaaat |
41915620 |
T |
|
| Q |
216 |
aagtcaaatgattaataagttttaaaattgtttaattttcattaatactttaatgtatcttgacattagcagcttaccttaacatgctgatgctatattg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41915621 |
aagtcaaatgattaataagttttaaaattgtttaattttcattaatactttaatgtatcttgacattagcagcttaccttaacatgctgatgctatattg |
41915720 |
T |
|
| Q |
316 |
ctgttccccattttttaata |
335 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41915721 |
ctgttccccattttttaata |
41915740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 326 - 449
Target Start/End: Original strand, 41915923 - 41916046
Alignment:
| Q |
326 |
ttttttaataagccgcacacatgtggttgaggcttcaacttagtactataaaaggcattgaagagagagatataataatgcaattgcaatgtaccatata |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41915923 |
ttttttaataagccgcacacatgtggttgaggcttcaacttagtactataaaaggcattgaagagagagatataataatgcaattgcaatgtaccatata |
41916022 |
T |
|
| Q |
426 |
gagaactcctaaataaacaaaata |
449 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41916023 |
gagaactcctaaataaacaaaata |
41916046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University