View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_high_6 (Length: 306)
Name: NF19523_high_6
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5018671 - 5018780
Alignment:
| Q |
1 |
aataaagaaatatcatttcattctaaaggtatgtattagatgcagctcatcaaaaattcttccataatgatagtttaatacactgtcaacttgacagggt |
100 |
Q |
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| T |
5018671 |
aataaagaaatatcatttcattctaaaggtatgtattagatgcagctcatcaaaaattcttccataatgatagtttaatacactctcaacttgaccgggt |
5018770 |
T |
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| Q |
101 |
taccaatttt |
110 |
Q |
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|||||||||| |
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| T |
5018771 |
taccaatttt |
5018780 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 5018777 - 5018861
Alignment:
| Q |
199 |
ttttgatatttctaaaagcaatttaattcctttggtcataaggccacttcatatctattcaatactcataaaatgtgttatacta |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018777 |
ttttgatatttctaaaagcaatttaattcctttggtcataaggccacttcatatctattcaatactcataaaatgtgttatacta |
5018861 |
T |
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