View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_low_2 (Length: 528)
Name: NF19523_low_2
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 21710728 - 21711021
Alignment:
| Q |
26 |
tggtgcaataaaataaaacattgcaactttaaaaataatatgtacatcattcaaagttcaaacaatcctccacatttgtgggaactaactgatattttgg |
125 |
Q |
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| T |
21710728 |
tggtgcaataaaataaaacattgcaagtttaaaaagaatatgtacatcattcaaagttcaaacaatccccgacattcgtgggaactaaccaatattttgg |
21710827 |
T |
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| Q |
126 |
tttagaagttcatctgttttatcacatgatccctcaatagctagcgcatccacagaattaaattacggaaaaatactatgatgtaactgcaaagtttatc |
225 |
Q |
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| T |
21710828 |
tttagaagttcatctgttttatgacacgatccctcaatagc----gcatccacagaattaaattacagaaaaatactatgatgtaaatgaaaagtttctc |
21710923 |
T |
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| Q |
226 |
actacaagagtatcatgaaaacattttctagtcacatgcattttatctggaaaaactaaaattttcaaattacagtatttaagaactgcataagaaaa |
323 |
Q |
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| T |
21710924 |
actacaagagtatcatgaaaacattttctactcacatgcattttatctggcaaaactaaaattttcaaattacagtatttaagaactgcataaaaaaa |
21711021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 322 - 492
Target Start/End: Original strand, 21711823 - 21711993
Alignment:
| Q |
322 |
aacaaagttgaaacaccccaataataagattgaatgataggaagtaaaactccaatttcttccattgtagaaccagtttcaatatgggaatagcagacct |
421 |
Q |
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| T |
21711823 |
aacaaaggtgaaacatcacaataataacattgaatgataggaagtaaaactccaatttcttccattgcagaaccagtttcaatatgtgaatagcagacct |
21711922 |
T |
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| Q |
422 |
gac-aatagttatatgaaacaagttatatggatgtttataatatcaaattcatgatgactttcactatatta |
492 |
Q |
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| T |
21711923 |
gccaaatagttatatgaaacaagttatatggatgtttatgatatcaaattcatgatgac-ttcactatatta |
21711993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 422
Target Start/End: Complemental strand, 21708207 - 21708125
Alignment:
| Q |
340 |
caataataagattgaatgataggaagtaaaactccaatttcttccattgtagaaccagtttcaatatgggaatagcagacctg |
422 |
Q |
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||||||||| ||||||| | | ||||||||||||||||||||||||||| ||||||||| ||| || | ||||||||||||| |
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| T |
21708207 |
caataataacattgaatagttgaaagtaaaactccaatttcttccattgttgaaccagttgcaagattgcaatagcagacctg |
21708125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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