View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_low_3 (Length: 478)
Name: NF19523_low_3
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 478
Target Start/End: Original strand, 3783373 - 3783815
Alignment:
| Q |
21 |
tgcggtggtggtacaatgacagtaatgggtatgtggttttgtgatgatgaagatcaagttattatgtggtggctcaatgatgaaggatttaacaagtgat |
120 |
Q |
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| T |
3783373 |
tgcggtggtggtacaatgacagtactgggtatgtggttttgtgatgatgaagatcaagttattatgtggtggctcaatgatgaaggatttaacaagtgat |
3783472 |
T |
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| Q |
121 |
tagtttgtcgtcacgtaatgaaagtacaataatgtttgtatccatagagaatgcgtgatttcaacaatactactacgcttataattaaaatgtgcaaaaa |
220 |
Q |
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| T |
3783473 |
tagtttgtcgtcacgtaatgaaagtacaataatgtttgtatccatagagattgcgtgatttcaacaatactactacgcttatgattaaaatgtgcaaaaa |
3783572 |
T |
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| Q |
221 |
taagggctgcacttgacaagttagactttgcttcatttattgttcatttatgagagagataaatacatataatagtttagtgaaatccattagtagaacc |
320 |
Q |
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| T |
3783573 |
taagggctgcacttgacaagttaaattttgcttcatttattgttcatttatgaaagagattgataaatattatagtttagtgaaatccatcggtggaatc |
3783672 |
T |
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| Q |
321 |
cactaaatcactaatctatttcttatgacagcttaacgagattcattagtaagatccattaaatcattaatttatttcttgtgtatatctctctcgtaaa |
420 |
Q |
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| T |
3783673 |
cactaaatcactaa------tcttatgacagcttaacgagatccat-------at--attaaatcactaatttatttcttgtgtatatctctctcgtaaa |
3783757 |
T |
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| Q |
421 |
taaacaaacatgccatggatcactttgaggtatgagtatcaagcgtgcttggtgcgta |
478 |
Q |
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| T |
3783758 |
taaacaaacatgccatggatcactttgaggtatgagtatcaagcgtgcttggtgcgta |
3783815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 34453959 - 34454023
Alignment:
| Q |
245 |
actttgcttcatttattgttcatttatgagagagataaatacatataatagtttagtgaaatcca |
309 |
Q |
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| T |
34453959 |
actttgctctatttattgtctatttataagagagataaacacaaataataatttagtgagatcca |
34454023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 32835131 - 32835170
Alignment:
| Q |
255 |
atttattgttcatttatgagagagataaatacatataata |
294 |
Q |
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| T |
32835131 |
atttattgttcatttatgagagagatagatacatgtaata |
32835170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 16875145 - 16875109
Alignment:
| Q |
245 |
actttgcttcatttattgttcatttatgagagagata |
281 |
Q |
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| T |
16875145 |
actttgctccatttattgtccatttatgagagagata |
16875109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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