View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_low_7 (Length: 295)
Name: NF19523_low_7
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 52145426 - 52145707
Alignment:
| Q |
1 |
ggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagttccttcatcttc |
100 |
Q |
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| T |
52145426 |
ggtcattggcagacagggcagtacaacgagttgtgttatcatttgttacctcaaatttacacttatttggacacatgtataacttagttccttcatcttc |
52145525 |
T |
|
| Q |
101 |
gtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52145526 |
gtcatcaacgtcttcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgc |
52145625 |
T |
|
| Q |
201 |
atgcaattttggttgaggttttcaacactctgatacagatttcctaaactaccaaccataccatttgtgcttaggagcttaa |
282 |
Q |
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| T |
52145626 |
atgcaattttggttgaggttttcaacactctgatacagatttcctaaactaccaatcatgccatttgtgcttaggagcttaa |
52145707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 280
Target Start/End: Original strand, 52142021 - 52142187
Alignment:
| Q |
114 |
tcattctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgcatgcaattttggt |
213 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | |||||||| |||||| |||| ||||| |||| |||| |
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| T |
52142021 |
tcattctgggtaaggaatcctgaaatttcagttgacgagctttgagctcttgggtttaagagtacatccttagtttgatctggtagcatgtaattctggt |
52142120 |
T |
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| Q |
214 |
tgaggttttcaacactctgatacagatttcctaaactaccaaccataccatttgtgcttaggagctt |
280 |
Q |
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| T |
52142121 |
tgaggttttcaacactctcatacagattccctaagctaccaaccatgccattagcgcttagcagctt |
52142187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 117 - 280
Target Start/End: Complemental strand, 17522563 - 17522400
Alignment:
| Q |
117 |
ttctgggtaaggaagcctgagatttcagttgaaaagctttgagctcttgggtttagcaagacatccttcgtttgaaatggttgcatgcaattttggttga |
216 |
Q |
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||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| | |||||||||||||| |||| |||||||||| || |||| |
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| T |
17522563 |
ttctgagtaaggaatcctgcgatttcagttgacgagctttgagctcttgggtttaagagaacatccttcgtttgttctggtagcatgcaattctgattga |
17522464 |
T |
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| Q |
217 |
ggttttcaacactctgatacagatttcctaaactaccaaccataccatttgtgcttaggagctt |
280 |
Q |
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| T |
17522463 |
ggttttcaacactctcatacagattccctaagctaccaaccatgccatttgcgcttagtagctt |
17522400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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