View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19523_low_8 (Length: 292)
Name: NF19523_low_8
Description: NF19523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19523_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 36766003 - 36765736
Alignment:
| Q |
9 |
ataattaccaatataattcctcatgattcattttccatatacaacacaaatgaattactcactcaaagatgattttaattaaattcctaaatagtttatt |
108 |
Q |
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| T |
36766003 |
ataattaccaatataattcctcatgattcattttccatatacaacacaaatgaattactcactccaagatgattttaattaaattcctcaatagtttatt |
36765904 |
T |
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| Q |
109 |
aataaaggatttaaagcacttgataatcatcaatggaaaactaaaatcacccattagaccatgacaacatttaatactcatttaatagcatagattataa |
208 |
Q |
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| T |
36765903 |
aataaaggatttaaagcacttgataatcatcaatggaaaactaaaatcacccataagaccatgacaacatttaatactcatttaatagcatagattataa |
36765804 |
T |
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| Q |
209 |
tagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcatttct |
276 |
Q |
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| T |
36765803 |
tagaaagtaaagaaaaaaggtaacaataaagtaaaggaaacaaatttgacaaacaagtaggcatttct |
36765736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 36747395 - 36747302
Alignment:
| Q |
181 |
aatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
274 |
Q |
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| T |
36747395 |
aatactcatttaataacatagattataatagaaagtaaagaaaaaaggtagcaataaagtaaagaaaacaaatttgacaaacaagtaggcattt |
36747302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 36754790 - 36754702
Alignment:
| Q |
184 |
actcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
274 |
Q |
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| T |
36754790 |
actcatttaataaca--gattataatagaaagtaaagaaaaaaggtagcaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
36754702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 36770723 - 36770636
Alignment:
| Q |
179 |
ttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagt |
266 |
Q |
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| T |
36770723 |
ttaatactcatataataacatagattataatagaaagaaaagaaaaaaggcaacaataaagtaaaggaaacaaattcgacaaccaagt |
36770636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 36771242 - 36771143
Alignment:
| Q |
24 |
attcctcatgattcattttccatatacaacacaaatgaattactcactcaaagatgattttaattaaattcctaaatagtttattaataaaggatttaaa |
123 |
Q |
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| T |
36771242 |
attcttcatgattcatttgcaatatataacacaaaggaattactcactacaagatgattttaattaaattcctcaactgcttattaataaaggatttaaa |
36771143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 23439012 - 23439105
Alignment:
| Q |
179 |
ttaatactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcat |
272 |
Q |
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||||||| ||| ||||||||||||||| |||| |||| ||| | | |||| | | |||||||||||||||||||||||||||| |||||||| |
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| T |
23439012 |
ttaatacccatataatagcatagattagaatataaagaaaacaggacaggtaatgacaaagtaaaggaaacaaatttgacaaacaggtaggcat |
23439105 |
T |
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