View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_high_2 (Length: 600)
Name: NF19524_high_2
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 580
Target Start/End: Complemental strand, 5441102 - 5440534
Alignment:
| Q |
13 |
aatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaatgt |
112 |
Q |
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| T |
5441102 |
aatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaatgt |
5441003 |
T |
|
| Q |
113 |
gtctcaagttctcccatcactagtaaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctgtaatatatttt |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
5441002 |
gtctcaagttctcccatcactagttaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctcta--atatttt |
5440905 |
T |
|
| Q |
213 |
tatctttttctgggccagtggaggattttcaacaatctttatgaattgttcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatgttt |
312 |
Q |
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| T |
5440904 |
tatctttttctgggccagtcgaggattttcaacaatctttatgaattattcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatgttt |
5440805 |
T |
|
| Q |
313 |
taattttcacattttatgctcaactagaattttggttacacatacttcaaggaatgannnnnnnatcatgtaacatggtttgtttgagtcaataaaattt |
412 |
Q |
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| T |
5440804 |
taattttcacattttatgctcaactagaattttggttacacatacttcaaggaatga-ttttttatcatgtaacatggtttgtttgagtcaataaaattt |
5440706 |
T |
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| Q |
413 |
tgttgtagatatccctctattgtaccaaataaaaaatctactcattactgattgttatttcctccatcttaaatcatag----tcaactattccatacga |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
5440705 |
tgttgtagatatccctctattgtaccaaataaaaaatctactcattactgattgttatttcctccatcttaaatcatagatctttaactattccatacga |
5440606 |
T |
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| Q |
509 |
attaaaaatatagttaattttatatgtgaaaaagcaagtataaatgattttataaaattatccttcattaat |
580 |
Q |
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| T |
5440605 |
attaaaaatatagttaattttatatgtgaaaaagcaagtataaatgattttataaaattatccttcattaat |
5440534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 2734613 - 2734667
Alignment:
| Q |
512 |
aaaaatatagttaattttatatgtgaaaaagcaagtataaatgattttataaaat |
566 |
Q |
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| T |
2734613 |
aaaaatatagttaattttgtatgggaaagaaaaattataaatgattttataaaat |
2734667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 576
Target Start/End: Complemental strand, 24346359 - 24346330
Alignment:
| Q |
547 |
tataaatgattttataaaattatccttcat |
576 |
Q |
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| T |
24346359 |
tataaatgattttataaaattatccttcat |
24346330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 555 - 583
Target Start/End: Complemental strand, 5461709 - 5461681
Alignment:
| Q |
555 |
attttataaaattatccttcattaataat |
583 |
Q |
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| T |
5461709 |
attttataaaattatccttcattaataat |
5461681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 580
Target Start/End: Complemental strand, 27003286 - 27003250
Alignment:
| Q |
544 |
aagtataaatgattttataaaattatccttcattaat |
580 |
Q |
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|||||||||| |||||||||||||||| ||||||||| |
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| T |
27003286 |
aagtataaataattttataaaattatcgttcattaat |
27003250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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