View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_high_7 (Length: 339)
Name: NF19524_high_7
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 16633699 - 16633395
Alignment:
| Q |
17 |
aagtaatagaaaaacttcatacatactaaactaattaaattcaaaaatcagaaagtgtaaaaatcaaagagaaaa-gacaactttaagatttaac-tttt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
16633699 |
aagtaatagaaaaacttcatacatactaaactaattaaattcaaaaatcagaaagtgtaaaaatcaaagacaaaaagacaactttaagatttaacgtttt |
16633600 |
T |
|
| Q |
115 |
ttaactctgcctaatagttccttaaaaaattttctacctaatggttatataaaggcaataatggaatgaaaaagttataatatatttcattccatccact |
214 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
16633599 |
ttaattctgcctaatagttccttaaaaaaatttctacctaatagttatataaaggcaataatgaaataaaaaagttataatatatttcattccatccact |
16633500 |
T |
|
| Q |
215 |
tttcaaacaatggaataaaaagtttgatccgttctattgtaaaatacccaaaccctaaaatgaaatttttattctattccgctgcatttcattatctttt |
314 |
Q |
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||| ||||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||| |
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| T |
16633499 |
ttttaaacaatggaataaaaagtttgatctgttatgttgtaaaatacccaaattctaaaatgaagtttttattctattccgctccattccattatctttc |
16633400 |
T |
|
| Q |
315 |
attct |
319 |
Q |
| |
|
||||| |
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|
| T |
16633399 |
attct |
16633395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 12432919 - 12432864
Alignment:
| Q |
174 |
aatggaatgaaaaagttataatatatttcattccatccacttttcaaacaatggaat |
230 |
Q |
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|||||||| ||||||||||||| |||| |||||| || ||||| ||||||||||||| |
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| T |
12432919 |
aatggaat-aaaaagttataatttattccattccgtcaactttccaaacaatggaat |
12432864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 38946171 - 38945895
Alignment:
| Q |
20 |
taatagaaaaacttcatacatactaaactaattaaattcaaaaatcagaaagtgtaaaaatcaaagagaaaa-gacaactttaagatttaacttttttaa |
118 |
Q |
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|
||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
38946171 |
taatagaaaaacttcatacgtacttaactaactaaattcaaaaatcagaaagtgtaaaaatcaaagagaaaacgacaactttaagatttaactattttaa |
38946072 |
T |
|
| Q |
119 |
ctctgcctaatagttccttaaaaaattttctacctaatggttatataaaggcaataatggaatgaaaaagttataatatatttcattccatccacttttc |
218 |
Q |
| |
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||| |||||||||||||||| |||||||||| ||||||||| || |||| || ||| |||| || |||||| |||||||||| |||||||| | |
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| T |
38946071 |
ttct-----atagttccttaaaaaa-aatctacctaatagttatataagggtaatattgaaat-aaaatgtcataatacatttcattccttccactttcc |
38945979 |
T |
|
| Q |
219 |
aaacaatggaataaaaagtttgatccgttctattgtaaaatacccaaaccctaaaatgaaatttttattctattccgctgcatt |
302 |
Q |
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|| |||| |||||||||||||| || |||| || | ||||||| |||| | ||||||| ||||| ||| ||| |||| |||| |
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|
| T |
38945978 |
aatcaatagaataaaaagtttgttctgttccatcatcaaatacctaaacaatgaaatgaagtttttgttccatttcgctccatt |
38945895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 15023869 - 15023950
Alignment:
| Q |
23 |
tagaaaaacttcatacatactaaactaattaaattcaaaaatcagaaagtgtaaaaatcaaagagaaaagacaactttaagatttaac |
110 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
15023869 |
tagaaaatcttcatacatactaaacttattaaattcaaa----agtaagtgttaaaatcaaagag--aagacaactttaaaatttaac |
15023950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 21521454 - 21521563
Alignment:
| Q |
186 |
aagttataatatatttcattccatccacttttcaaacaatggaataaaaagtttgatccgttctattgtaaaatacccaaaccctaaaatgaaattttta |
285 |
Q |
| |
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|||||||||| ||| |||||| | |||||||||||||||||||||| | |||| ||| ||| || ||| |||| |||||| | |||||||| |||| |
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| T |
21521454 |
aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatattta |
21521553 |
T |
|
| Q |
286 |
ttctattccg |
295 |
Q |
| |
|
||| |||||| |
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|
| T |
21521554 |
ttccattccg |
21521563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 21532020 - 21532129
Alignment:
| Q |
186 |
aagttataatatatttcattccatccacttttcaaacaatggaataaaaagtttgatccgttctattgtaaaatacccaaaccctaaaatgaaattttta |
285 |
Q |
| |
|
|||||||||| ||| |||||| | |||||||||||||||||||||| | |||| ||| ||| || ||| |||| |||||| | |||||||| |||| |
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| T |
21532020 |
aagttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatattta |
21532119 |
T |
|
| Q |
286 |
ttctattccg |
295 |
Q |
| |
|
||| |||||| |
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| T |
21532120 |
ttccattccg |
21532129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 42028748 - 42028694
Alignment:
| Q |
174 |
aatggaatgaaaaagttataatatatttcattccatccacttttcaaacaatgga |
228 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||| ||||||||||| |
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|
| T |
42028748 |
aatggaataaaaaagttataactaatttcattccgtccactttccaaacaatgga |
42028694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 2144655 - 2144600
Alignment:
| Q |
174 |
aatggaatgaaaaagttataatatatttcattccatccacttttcaaacaatggaat |
230 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||| || ||||| ||||||||||||| |
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|
| T |
2144655 |
aatggaat-aaaaagttataatttattccattccgtcaactttccaaacaatggaat |
2144600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 23416440 - 23416347
Alignment:
| Q |
174 |
aatggaatgaaaaagttataatatatttcattccatccacttttcaaacaatggaataaaaagtttgatccgttctattgtaaaatacccaaac |
267 |
Q |
| |
|
|||||||| ||||| |||||| | ||| |||||| | || ||| ||||||||||||||| | |||| |||| || |||||| ||||||||||| |
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| T |
23416440 |
aatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaac |
23416347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 28300834 - 28300779
Alignment:
| Q |
174 |
aatggaatgaaaaagttataatatatttcattccatccacttttcaaacaatggaat |
230 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||| || ||||| ||||||||||||| |
|
|
| T |
28300834 |
aatggaat-aaaaagttataatttattccattccgtcaactttccaaacaatggaat |
28300779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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