View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19524_high_9 (Length: 320)
Name: NF19524_high_9
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_high_9 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0099 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 18618231 - 18617933
Alignment:
| Q |
1 |
agcaaatattttacagtgatccataagtcttcatgaaacctaatattaacaaacatagttaccatctaactagagtcatactgcatcagtcatactacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18618231 |
agcaaatattttacagtgatccataagtctttatgaaacctaatatgagcaaacatagttaccatctaactagagtcatattgcatcagtcatactacat |
18618132 |
T |
|
| Q |
101 |
ctgtcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaatta |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18618131 |
cagtcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaatta |
18618032 |
T |
|
| Q |
201 |
acactcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18618031 |
acactcttaaactctttcccacatggaagaagtcaaatctaaacatggtcattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
18617933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 20357479 - 20357201
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaac-aaacatagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||| || |||||||||| ||| ||| | ||||||| ||||||||||| || |||||||||||||| | |
|
|
| T |
20357479 |
aatattttacaatgatcaataattcttcatgagacttaatattaacgaaatataaatgccatctagctagagtcataatgtatcagtcatactac----g |
20357384 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
|||| |||| ||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
20357383 |
tcattctac-----------tatgtcaccaagactagctaccatccataat-----atagagttttaagagacattaagtacacaacaaattagttagca |
20357300 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatc----taaacatggccattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
||||||||||||||| | || | ||||||| ||| ||||||| ||||||||| ||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
20357299 |
ctcttaaactctttctcgcacacaggaagtcatatctaattaaacatttccattaggg-tttcccccaatgaactctccctcctcaaggtactcctctgg |
20357201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 13464130 - 13463854
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaaca-aacatagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
13464130 |
aatattttacagtgatccataagtcttcatgagacctaatattaacataacatagttaccatctagttagagtcataatgcatcagtcatactacatc-- |
13464033 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
|||| |||||| |||||||| ||| |||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
13464032 |
------------agtcctactatgtcaccaaggctgactaccatt----caaaaaaatagagtttgaagagacattaagtacacaacaaactaattagaa |
13463949 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
|||||||||| |||||| || |||||||| |||||||||||| ||||| || ||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
13463948 |
ctcttaaactatttcccgcacactagaagtcatatctaaacatggacatta-ggatttcccccaatgaactctccatccaccaggtactcatctgg |
13463854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 19239499 - 19239774
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaa-catagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19239499 |
aatattttacgatgatccataaatcttcatgagacctaatattaacaaaacatagttacaatctaactagagtcataatgcatcagtcata--------- |
19239589 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
| ||||||||| |||||| |||||||| ||||||||||| | || ||| ||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
19239590 |
-----cgacatcagtcctactatgtcaccaaggctggctaccatcca-----aataatgaagtttgaagagacattaagtacacaacaaactaattagca |
19239679 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
19239680 |
ctcttaaactttttcctgcacactagaagtcatatctaaacatggccattaggg-gttcccccgatgaactctccatcctctaggtactcatctgg |
19239774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 21627769 - 21628043
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatcagtcatactacatctg |
103 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || ||||||||||||| ||| | ||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
21627769 |
aatattttacaatgatccataattcttcatgagacttaatattaacaaaatataaatgccatctagctagagtcataatgtatcagtcatactac----- |
21627863 |
T |
|
| Q |
104 |
tcatgctacatcagtcatactatatcaccaagactggctaccattaataaataaaaatagagttttaagagacattaagtacacaacaaacaaattaaca |
203 |
Q |
| |
|
|| | || |||||| ||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
21627864 |
----gcca------tcctactatgtcaccaagactagctaccatcca-----aaatatagagttttaagagacattaagtacacaacaaactagttagca |
21627948 |
T |
|
| Q |
204 |
ctcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggttttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
||||||||||||||| || || | |||| ||||||| || ||||||||| | ||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
21627949 |
ctcttaaactctttcttgcacacaaaatgtcatatctaaagatttccattaggg-tctcccccaatgaactctccctcctcaaggtactcctctgg |
21628043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 21620458 - 21620596
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggtt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| || | | |||| ||| ||| || ||||||||| | |
|
|
| T |
21620458 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactctttcttgcacacagaatgtcatatcaaaatatttccattaggg-t |
21620556 |
T |
|
| Q |
260 |
ttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
21620557 |
ctcccccaatgaactctccctcctcaaggtactcctctgg |
21620596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 292
Target Start/End: Original strand, 24984091 - 24984222
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggtt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||| || | | |||| |||||||||| ||||| |||| |
|
|
| T |
24984091 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactcgttcttgcacacagaatgtcatatctaaacatttacatta-ggtt |
24984189 |
T |
|
| Q |
260 |
ttcccccaatgaacactccatcctcaaggtact |
292 |
Q |
| |
|
| |||||||||||| |||| ||||||||||||| |
|
|
| T |
24984190 |
tccccccaatgaactctccctcctcaaggtact |
24984222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 24925353 - 24925436
Alignment:
| Q |
5 |
aatattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatca |
88 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
24925353 |
aatattttacaatgatc-ataagtcttcatgagacataatattaacaaaatataaataccatctaactagagtcataatgcatca |
24925436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 142103 - 142045
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
142103 |
atagagttttaagagacattaagtacacaacaaactagttagcactcttaaactctttc |
142045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 142234 - 142145
Alignment:
| Q |
10 |
tttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatcagtcatactac |
98 |
Q |
| |
|
|||||| |||||||||| ||||||||| || ||||||||||||| ||| | |||||| ||||||||||| || |||||||||||||| |
|
|
| T |
142234 |
tttacaatgatccataattcttcatgagacttaatattaacaaaatataaatgtcatctagctagagtcataatgtatcagtcatactac |
142145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 142028 - 141988
Alignment:
| Q |
259 |
tttcccccaatgaacactccatcctcaaggtactcatctgg |
299 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
142028 |
tttcccccaatgaactctccctcctcaaggtactcctctgg |
141988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 392694 - 392830
Alignment:
| Q |
160 |
atagagttttaagagacattaagtacacaacaaacaaattaacactcttaaactctttcccacatggaagaagtcaaatctaaacatggccattagggtt |
259 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || | ||||||| ||||||| || |||||| || | |
|
|
| T |
392694 |
atagagttttaagacacattaagtacacaacaaactagttagcactcttaaactctttattgcacacaggaagtcatatctaaatatttccatta-ggat |
392792 |
T |
|
| Q |
260 |
ttcccccaatgaacactccatcctcaaggtactcatctg |
298 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||| |||| |
|
|
| T |
392793 |
ttcccccaatgaactctccct-ctcaaggtactcctctg |
392830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 18487 - 18568
Alignment:
| Q |
7 |
tattttacagtgatccataagtcttcatgaaacctaatattaacaaac-atagttaccatctaactagagtcatactgcatca |
88 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
18487 |
tattttacaatgatc-ataagtcttcatgagacataatattaacaaaatataaataccatctaactagagtcataatgcatca |
18568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University