View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19524_low_11 (Length: 254)
Name: NF19524_low_11
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 53426549 - 53426323
Alignment:
| Q |
13 |
catcaaagctaagctcaatttaagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53426549 |
catcaaagctaagctcaatataagagaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagt |
53426450 |
T |
|
| Q |
113 |
caagatcatccttaactcctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatca |
212 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
53426449 |
caagatcatccttaactcctcaatcagagaatgacaatcaagtttatattgtgtatatgggagcttcacattcaactaatggttcccttcgcgaagatca |
53426350 |
T |
|
| Q |
213 |
tgcccatattttaaacacagtgttaaa |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53426349 |
tgcccatattttaaacacagtgttaaa |
53426323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 53434678 - 53434484
Alignment:
| Q |
44 |
taaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaatcaaagaa |
143 |
Q |
| |
|
||||||||||||||||| || || ||||| || || | |||||||||||||||||| | |||||||||||||| |||| |||| || | |||||||||| |
|
|
| T |
53434678 |
taaacatgaaaggaaatccaattttattgatattagtgttttactcactcttccttcttcttggagagtcaaggtcatacttagctaataaatcaaagaa |
53434579 |
T |
|
| Q |
144 |
tgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgttaa |
238 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||| || |||||| ||||||||||| |
|
|
| T |
53434578 |
tgaaaatcaaatttatattgtgtatatgggagctacggattcaatagatggttcccttcgtaaagatcatgcctatgttttaagcacagtgttaa |
53434484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 26099611 - 26099413
Alignment:
| Q |
37 |
agaatactaaacatgaaaggaaattcagttctattggtactaatattttactcactcttccttttccttggagagtcaagatcatccttaactcctcaat |
136 |
Q |
| |
|
||||| |||||||||||| ||||| || || | ||| |||||| ||||||||| ||||||||| |||||||||| || |||||| ||| || ||||| |
|
|
| T |
26099611 |
agaatgctaaacatgaaaagaaatccaattttcttgatactaacattttactctctcttcctt---cttggagagttaaaatcatctttagctactcaac |
26099515 |
T |
|
| Q |
137 |
caaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttcgcgaagatcatgcccatattttaaacacagtgtt |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||||||||| ||||||||| ||| ||||||||| ||||| |
|
|
| T |
26099514 |
caaagaatgaaaatcaagtttatattgtgtacatgggaggtgtggattcaactaatggttcccttcgtaaagatcatgatcatgttttaaacatggtgtt |
26099415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 53311194 - 53311123
Alignment:
| Q |
131 |
ctcaatcaaagaatgacaatcaagtttatattgtgtatatgggagctgcacattcagctaatggttcccttc |
202 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||| ||||| ||||| || |||||| |
|
|
| T |
53311194 |
ctcaatcggagaatgacaaacaagtttatattgtgtacatgggagctgcagattcaactaatagtacccttc |
53311123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University