View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_low_2 (Length: 657)
Name: NF19524_low_2
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 23 - 632
Target Start/End: Complemental strand, 14783234 - 14782628
Alignment:
| Q |
23 |
atctctcaccatgaaccctaccaacaaagaagacacaattgacattgaagccattgatcatcaagaagaagaaacacaacaacatcaaaatcaaccatca |
122 |
Q |
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| T |
14783234 |
atctctcaccacgaaccctaccaacaatgaagacacaattgacattgaagccattgatcatcaagaagaa---acacaacaacatcaaaatcaaccatca |
14783138 |
T |
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| Q |
123 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactct |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14783137 |
ccatttgtcaacaacaaaaaccacctgcatgcaaatgatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactatctcttactct |
14783038 |
T |
|
| Q |
223 |
ttgttggttcaacctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggcttccc |
322 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14783037 |
ttgttggttcaatctcatcaagtttactctcaaaatactatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggcttccc |
14782938 |
T |
|
| Q |
323 |
tctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccaaaaatgttaaccctatcaattttt |
422 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14782937 |
tctcttgatcatcccaatttttctcccttatctcttcaatctcaccaaaagaaaccctttcactgatttcacaccgaaaatgttaaccctatcaattttt |
14782838 |
T |
|
| Q |
423 |
gttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacttttgctatcttcacagcttgttt |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14782837 |
gttggtatcatgttagggtttaacaatcttttaatctcatggggtgttgcatatctacctgtttcaacttcagcacttttgctatcttcacagcttgttt |
14782738 |
T |
|
| Q |
523 |
tcaatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcatt |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14782737 |
tcaatctcattctctcagccatcatagtgaaacaaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcatt |
14782638 |
T |
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| Q |
623 |
gaattctagt |
632 |
Q |
| |
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|||||||||| |
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| T |
14782637 |
gaattctagt |
14782628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 159 - 632
Target Start/End: Complemental strand, 14775227 - 14774751
Alignment:
| Q |
159 |
gatcaaaaatccattacaaacaaaaggtacatgccacttttgataatcaactttctcttactctttgttggttcaacctcatcaagtttactctcaaaat |
258 |
Q |
| |
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|||||||| |||| || |||||||||||||| || |||||| | || |||| || || |||||||| || ||| || ||||||||||||||||| | |
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| T |
14775227 |
gatcaaaagtccaccactaacaaaaggtacataccccttttggttattaactaccttttgctctttgtagggtcactttcttcaagtttactctcaaagt |
14775128 |
T |
|
| Q |
259 |
actatttcatccacaaaggttcaagcaaatgggtctcaacttgggttcaatgtgctggcttccctctcttgatcatcccaatttttctcccttatc-tct |
357 |
Q |
| |
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||||||| ||||| |||||||| || | |||||| |||||||||||||||| | | || || |||||||| | ||||||||||| |||||| ||| |
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| T |
14775127 |
actattttatccataaaggttctagtagatgggtttcaacttgggttcaatcttcaggttttcctctcttattagtcccaattttttcaccttattatct |
14775028 |
T |
|
| Q |
358 |
tc--aatctcaccaaaagaaaccctttcactgatttcacaccaaaaatgttaaccctatcaatttttgttggtatcatgttagggtttaacaatctttta |
455 |
Q |
| |
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|| ||| || |||||||| || || | ||||||| ||||| |||||||| ||||||||| ||||| | ||||| || | || || ||||| |
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| T |
14775027 |
tctaaattcaacaaaaagaaaacccttttcagatttcaacccaaagatgttaactttatcaatttccattggtgttatgttgggtgtcaataaccttttc |
14774928 |
T |
|
| Q |
456 |
atctcatggggtgttgcatatctacctgtttcaacttcagcacttttgctatcttcacagcttgttttcaatctcattctctcagccatcatagtgaaac |
555 |
Q |
| |
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|||||||||| | ||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| |||| || | ||||| ||||| | |
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| T |
14774927 |
ttctcatggggaaattcatatctacctgtttcaacctcagcccttttgttatcttcacagctagttttcaatcttgttctttctgttatcattgtgaagc |
14774828 |
T |
|
| Q |
556 |
aaaaaatcactttttcaaatctcaattgtgttattcttctcacattgagttcaatcattcttgcattgaattctagt |
632 |
Q |
| |
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|||||||||| |||||||||||||| ||||| || ||||| ||| | ||||| ||| ||||||||||| |||||||| |
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| T |
14774827 |
aaaaaatcaccttttcaaatctcaactgtgtgatccttcttacactaagttctatccttcttgcattggattctagt |
14774751 |
T |
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