View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_low_4 (Length: 473)
Name: NF19524_low_4
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 7037715 - 7037264
Alignment:
| Q |
1 |
ggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagtgctcatgtttaaa |
100 |
Q |
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| T |
7037715 |
ggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagtgctcatgtttaaa |
7037616 |
T |
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| Q |
101 |
gtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaaatggatcttaaaa |
200 |
Q |
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| T |
7037615 |
gtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaaatggatcttaaaa |
7037516 |
T |
|
| Q |
201 |
tgcttgaagacaacgtcaatttccatattggcgaatggaagccccactaaggaatttgaaatgggtcttcgattgagacaaggtgatcctttgttgccgt |
300 |
Q |
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| T |
7037515 |
tgcttgaagacaacgtcaatttccatattggcgaatggaagccccattaaggaatttgaaacgggtcttcgattgagacaaggtgatcctttgttgccgt |
7037416 |
T |
|
| Q |
301 |
ttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatgatgaaggctatgc |
400 |
Q |
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| T |
7037415 |
ttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatgatgaaggctatgc |
7037316 |
T |
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| Q |
401 |
tcgcctacaatacacagattatatgttaatcattggaggaaagggatggggg |
452 |
Q |
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| T |
7037315 |
tcgcctacaatacacagattatatgttaatcattggaggaaagggatggggg |
7037264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 36421241 - 36421201
Alignment:
| Q |
93 |
tgtttaaagtagacttcgaaaaggcgtatgacttagttgat |
133 |
Q |
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| T |
36421241 |
tgtttaaagttgacttcgaaaaggcgtatgattcagttgat |
36421201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 54163994 - 54164030
Alignment:
| Q |
93 |
tgtttaaagtagacttcgaaaaggcgtatgacttagt |
129 |
Q |
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| T |
54163994 |
tgtttaaagttgacttcgaaaaggcgtatgatttagt |
54164030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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