View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_low_5 (Length: 377)
Name: NF19524_low_5
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 39575770 - 39576108
Alignment:
| Q |
20 |
atgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacttatgctactagaaccgttaatactctctttgccagtttgataaaccctg |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |
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| T |
39575770 |
atgaaacctaagaaaatgatctacgttcttctctacaggaacactccaacttatgctgctagaaccgttaatactctctttgccagttttataaacaata |
39575869 |
T |
|
| Q |
120 |
tctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtagat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |
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| T |
39575870 |
tctggagcaatatattgatttgaatttggaccatcagacgtatcatttgcagtgcgtggaatatcaccgtcaaaggagcaattcttagcgttttgtagat |
39575969 |
T |
|
| Q |
220 |
tagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccaacgttaaaacgatgttttgtttccaa |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39575970 |
tagttacatatctgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccgacgttaaaacgatgttttgtttccaa |
39576069 |
T |
|
| Q |
320 |
ggctcgttgtgagtgtaaaccgccaatataagtagataa |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
39576070 |
ggctcgttgtgagtgtaaaccgccaatataagtagataa |
39576108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 39521128 - 39521462
Alignment:
| Q |
20 |
atgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacttatgctactagaaccgttaatactctctttgccagtttgataaaccctg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521128 |
atgaaacctaagtaaatgatctacgttcttctctacaggaacactccaacttatgttgctagaaccgttaatactctctttgccagtttgataaaccctg |
39521227 |
T |
|
| Q |
120 |
tctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtagat |
219 |
Q |
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| T |
39521228 |
tctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtggat |
39521327 |
T |
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| Q |
220 |
tagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccaacgttaaaacgatgttttgtttccaa |
319 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| || ||| |||| ||||||| ||| |||| |||||||| |
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| T |
39521328 |
tagttacataactgtcatctgctaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgttaagacggagtttggtttccaa |
39521427 |
T |
|
| Q |
320 |
ggctcgttgtgagtgtaaaccgccaatataagtag |
354 |
Q |
| |
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| T |
39521428 |
cgatcgttgtgagtgtaaaccgccactataagtag |
39521462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 93 - 300
Target Start/End: Original strand, 39543997 - 39544204
Alignment:
| Q |
93 |
ctctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaa |
192 |
Q |
| |
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||||||||| |||||| |||||| ||| |||||||||||| ||||||||||||||| ||| |||||| ||||||||||||| ||| || | ||| |
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| T |
39543997 |
ctctctttggcagtttcataaacagcgtccggagcaatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaa |
39544096 |
T |
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| Q |
193 |
agaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccacc |
292 |
Q |
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|| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| | ||| |
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| T |
39544097 |
aggaaccattcttagcgttttgtggattagttatataactgtcatctggtaaccattctctcgataaagtatcggtttttctatcgacagttccgctacc |
39544196 |
T |
|
| Q |
293 |
aacgttaa |
300 |
Q |
| |
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||| |||| |
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| T |
39544197 |
aacattaa |
39544204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 300
Target Start/End: Original strand, 39524630 - 39524908
Alignment:
| Q |
28 |
taagtaaatgatctacgttcttctctacaggaacactccaacttatgct---ac---tagaaccgttaatactctctttgccagtttgataaaccctgtc |
121 |
Q |
| |
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|||| |||||||||| |||||||| ||||||||||||||||||||| | || | ||||| |||| |||| ||||| |||||| |||||| | || |
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| T |
39524630 |
taaggaaatgatctatattcttctccacaggaacactccaacttatgtttaaaccgattgaaccattaacactcactttggcagttttataaacaatatc |
39524729 |
T |
|
| Q |
122 |
tggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtagatta |
221 |
Q |
| |
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|||| | || |||| ||||||||||| | || ||||| |||||||||||||||| |||| |||| ||||| | ||||||||||||||| ||| | |
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| T |
39524730 |
tggacctatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaatatcaccttcaaaggaaccattcttagcgttttggggatca |
39524829 |
T |
|
| Q |
222 |
gttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccaacgttaa |
300 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| |||| ||||||||| |||||| ||| |||| |||||||| |||| |
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| T |
39524830 |
gttatatatctgtcatctggtaaccattctcttgatagtgtatcagtttctctattaacaattccgccaccaacattaa |
39524908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 358
Target Start/End: Original strand, 39510957 - 39511220
Alignment:
| Q |
92 |
actctctttgccagtttgataaaccctgtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgcca |
191 |
Q |
| |
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|||||||| |||||||| |||||| | |||||| |||||||| | |||||||||||||||||||| ||||||||||| | || |||| |||| | |
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| T |
39510957 |
actctcttggccagttttataaacaatatctggaccaatatatatacttgaatttggaccatcagattcatcatttgcagcgtgtttaatatcacc---a |
39511053 |
T |
|
| Q |
192 |
aagaagtgattcttagcgttttgtagattagttacataactgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccac |
291 |
Q |
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||| | | |||| || |||||| ||||||||| || ||||||||| ||||||||||||| ||||| ||||| | | ||||| || | | || | |
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| T |
39511054 |
aaggaaccaatcttcgcattttgtggattagttatgtatctgtcatctcgtaaccattctcttgataatgtatcggcttctctagtgacattatcaccgc |
39511153 |
T |
|
| Q |
292 |
caacgttaaaacgatgttttgtttccaaggctcgttgtgagtgtaaaccgccaatataagtagataa |
358 |
Q |
| |
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| T |
39511154 |
ctacgttaagacgatgtttcgtttccaaagctcgttgtgagtttaaaccgccactataattagataa |
39511220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 39580415 - 39580543
Alignment:
| Q |
119 |
gtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaataccaccgccaaagaagtgattcttagcgttttgtaga |
218 |
Q |
| |
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||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| |||| |||| |||||||| |||||||||||| ||| || |
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| T |
39580415 |
gtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaaagaaaccattcttagcgttatgtgga |
39580514 |
T |
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| Q |
219 |
ttagttacataactgtcatctggtaacca |
247 |
Q |
| |
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||||| | |||||||||||||||||||| |
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| T |
39580515 |
ttagtgatgtaactgtcatctggtaacca |
39580543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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