View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19524_low_6 (Length: 350)
Name: NF19524_low_6
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_6 |
 | |
|
| [»] chr3 (16 HSPs) |
| |
|
| [»] scaffold0201 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23454534 - 23454873
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23454534 |
aatatggccttttgacaacaatctaagtcatcataactcaattttaatacattgtaaattttcgtattgggaatcttttggagctttttcaattcatttt |
23454633 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23454634 |
cccattcatctttgcctcttgaactcagattagcacctaaaacttttaaagccagaggattgcctttgcaataggcaattacactctctgatagatcttc |
23454733 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| || |||| ||| || | | ||||||| || |||||||||||| |||| ||||||||||| ||||| |||||| |
|
|
| T |
23454734 |
atatccaattttaggatgtttttccttgaagacagtcaaactgaatagctgaaaagaatcatgattattcaattccttaacctc---gtatatttcacat |
23454830 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23454831 |
ttactgaactgactaattatgtgcttatctctagttgtaataa |
23454873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23352416 - 23352755
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23352416 |
aatatggccttttgagaacaatctaagtcatcataactcaattttaacacattgtaaattttcctattgggaatcttttgtagctttttcaattcatttt |
23352515 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
23352516 |
tccattcttttttccctcttgaactcagattagcacctaaaacttttaaagccagcggattgccttggcaataggcaattacacgttctgatagatcttc |
23352615 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
||||||||| |||| || || |||||||| ||||||| | ||||||| |||||||||| | ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
23352616 |
atatccaatattaggatgcttttctctgaaggcagacaaacagaatagctgaagagaatcacgtttgttcaattccttaacctca---tatatttcacat |
23352712 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
23352713 |
ttactgaactgactaaatatatgtttatctctagttgtaataa |
23352755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23479058 - 23479397
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
23479058 |
aatatggccttttgacaacgatctaactcatcataactcaattttaacacattatgaatttttcgattgggaatcttttggagctttttcaattcatttt |
23479157 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
|||| |||||| || |||||||| ||||| | ||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23479158 |
cccacgcttcttggccccttgaactgagatttgcacctaaaacttttaatgccagagggttacctttgcaataggcaattacactttctgatagatcttc |
23479257 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||| || | | ||||||| || ||||||||| ||||||| || |||| |||| ||||| |||||| |
|
|
| T |
23479258 |
atatccaattttaggttgtttttctttgaaggcagtcaaactgaatagctgaaaagaatcatgcttgttcaattctttaagctca---tatatttcacat |
23479354 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23479355 |
ttactcacctgactaaatatgtgcttatctctagttgtaataa |
23479397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 23440390 - 23440723
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||| ||||||||||| | |||||||| ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
23440390 |
aatatggccttttaaaaaaaatctaagtcatcataactgaattttaacacggtataaattttcctatttggaatcttttcgagctttttcaattcatttt |
23440489 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| | ||||| |||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23440490 |
cccatgcctctttgcctcttgagcggagattttcccctaaaacttttaaagccagaggattgcctttgcaataggcaattacactttctgatagatcttc |
23440589 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
| |||||||||||| ||||| |||| ||| ||| || | | | ||||| |||||||||||| ||||||| ||||| |||||| ||||| |||||| |
|
|
| T |
23440590 |
acatccaattttagactgtttttctccgaaggcattcaaactgagtagctgaagagaatcatggttgttcaattccttgacctca---tatatctcacat |
23440686 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttg |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23440687 |
ttactgaactgactaaatatgtgcttatctctagttg |
23440723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 23472919 - 23473252
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||| ||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
23472919 |
aatatggcctgttgaaaaaaatctaagtcatcataactgaattttaacacgatataaattttcctatttggaatcttttcgagctttttcaattcatttt |
23473018 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| | ||||| |||||||| | ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23473019 |
cccatgcctctttgcctcttgagcggagatttacccctaaaacttttaaagccagaggattgcctttgcaataggcaattacactttctgatagatcttc |
23473118 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| ||| || | | ||||||| |||||||||||||||||||| | | | |||||| ||||| |||||| |
|
|
| T |
23473119 |
atatccaattttaggctgttttcctccgaaggcattcaaactgaatagctgaagagaatcatgattgttcaattacatgacctca---tatatctcacat |
23473215 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttg |
344 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23473216 |
ttactgaactgactaaatatgtgcttatctctagttg |
23473252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23469000 - 23469340
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| | ||||||||||| | |
|
|
| T |
23469000 |
aatatggccttttgacaacaatctaagtcatcataactcaattttaacacattaaaaattttcctattgggaatcttttggagcattttcaattcattgt |
23469099 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| |||| || | |||||||||| |||| | |||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23469100 |
cccatgcttccttgcttcttgaactcggatttgcacctaaaacttttatagccagaggattgcctttgcaataggcaattacactctctgatagatcttc |
23469199 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| || || | | ||||| | |||||||||||| ||||||| |||||||||||| | ||| | ||||| |
|
|
| T |
23469200 |
atatccaattttaggatgtttttctccgaagatagtcaaactcaatagttgaagagaatcatgtttgttcaattccttaacctcaca-tat-ttgcacat |
23469297 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
|| |||| ||||||| |||||| |||| |||||||| ||||| |
|
|
| T |
23469298 |
tttgtgaattgactaaatatgtgtttatatctagttgtaataa |
23469340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23499537 - 23499876
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
23499537 |
aatatggccttttgacaacgatctaagtcagcataactaaattttaacacattataaatcttttgattgggaatcttttggagctttttcagttcatttt |
23499636 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| ||||| || |||||||| ||||| | |||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
23499637 |
cccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaataggcaattacactatctgatacatcttc |
23499736 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
||||||| |||||| ||||| ||| |||| |||| || | | ||||||| |||||||||| | || | | |||||||||||| ||||| |||||| |
|
|
| T |
23499737 |
atatccagttttaggatgtttttctttgaaggcagtcaaactgaatagctgaagagaatcaggcttctctaattccttaacctca---tatatttcacat |
23499833 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
23499834 |
ttactcaactgactaaatatgtgcttatctctagttgtaataa |
23499876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23447769 - 23448108
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||| ||| || |||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
23447769 |
aatatggccttctgacaatgatctaaatcatcataactcaattttaacacatcataaatctttcgattgggaatcttttggagctttttcagttcatttt |
23447868 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| ||||| || |||||||| ||||| | |||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23447869 |
cccatgcttctcggccccttgaactgagatttgcacctaaaacttttaaagccagagggttacctttgcaataggcaattacactatctgatagatcttc |
23447968 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
||||||| |||||| ||||| ||| |||| ||| || | | ||||||| |||||||||| | || | | |||||||||||| ||||| |||||| |
|
|
| T |
23447969 |
atatccagttttaggatgtttttctttgaaggcaatcaaactgaatagctgaagagaatcaggcttctctaattccttaacctca---tatatttcacat |
23448065 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||| ||||| |
|
|
| T |
23448066 |
ttactcaactgactaaatatctgcttatctctagttgtaataa |
23448108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23386751 - 23387090
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| | ||| |||||| ||| |||||| |||||||||| || |
|
|
| T |
23386751 |
aatatgtccttttgaaaaatatctaagttatcataactcaattttaacatattgttaatttccccatttggaatcatttcaagctttttcaattcatctt |
23386850 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| ||| ||| |||||||||| ||||| |||||||||||||||||| | ||| || ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
23386851 |
cccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttctgatatatcttc |
23386950 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| || | | |||| || |||||||||||| ||||||| ||||| || ||| ||||| ||||| |
|
|
| T |
23386951 |
atatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattccttgacttca---tatatttcacaa |
23387047 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23387048 |
ttactgaactgacttagtatgtgcttatctctagttgtaataa |
23387090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 23405125 - 23405458
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| | ||| |||||||||| ||||| |||||||||| || |
|
|
| T |
23405125 |
aatatgtccttttgaaaaatatctaagttatcataactcaattttaacatattgttaatttccccatttggaatcttttcgagctttttcaattcatctt |
23405224 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| || ||| |||||||||| ||||| |||||||||||||||||| | ||| || ||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
23405225 |
cccatactattttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttcagatagatcttc |
23405324 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| ||| | | ||||| | |||||||||||| ||||||| || |||| |||| ||||| ||||| |
|
|
| T |
23405325 |
atatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattcattaaactca---tatatttcacaa |
23405421 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttg |
344 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| |
|
|
| T |
23405422 |
ttactgaactgacttagtatgtgcttatctctagttg |
23405458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 23463756 - 23464095
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| | ||| |||||| ||| ||||| |||||||||| || |
|
|
| T |
23463756 |
aatatgtccttttgaaaaatatctaagttatcataactcaattttaacatattgttaatttccccatttggaatcctttcgagctttttcaattcatctt |
23463855 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| ||| ||| |||||||||| ||||| |||||||||||||||||| | ||| || ||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
23463856 |
cccatacttttttgcctcttgaacggagatttttacctaaaacttttaaagccaaagggttgcctctgcaataggcaattacactttccgatagatcttc |
23463955 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| ||| | | ||||| | |||||||||||| ||||||| || |||| |||| ||||| ||||| |
|
|
| T |
23463956 |
atatccaattttaggctgtttttctccgaaggcaaacaaactgaatagttgaagagaatcatgtttgttcaattcattaaactca---tatatttcacaa |
23464052 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23464053 |
ttactcaactgacttagtatgtgcttatctctagttgtaataa |
23464095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 23398417 - 23398643
Alignment:
| Q |
12 |
tggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctatt-gggaatcttttgaagcttcttcaattcattttccc |
110 |
Q |
| |
|
||||||||||||| || || | | ||||||||||||||||||||||| ||||||||| ||||| |||||| ||||| ||||| | |||||| ||||||| |
|
|
| T |
23398417 |
tggccttttgaaagcagtcaaggccatcataactcaattttaacacaccgtaaattttcctatttgggaatattttggagcttttccaattctttttccc |
23398516 |
T |
|
| Q |
111 |
attcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttcata |
210 |
Q |
| |
|
|| |||||| || |||||||| |||| | | |||||||||||||||| ||||| |||| ||| ||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
23398517 |
atgtttctttgccccttgaacttggatttgcagctaaaacttttaaagccagagggtttcatttacaataggcaattagactttgtgatagatctttata |
23398616 |
T |
|
| Q |
211 |
tccaattttagcttgtttatctctgaa |
237 |
Q |
| |
|
||||||||||| ||||| |||||||| |
|
|
| T |
23398617 |
tccaattttaggatgtttttctctgaa |
23398643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 35768977 - 35768784
Alignment:
| Q |
28 |
atctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcattttcccattcttctttccctctt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| | | |||||||| || || || | ||||||||||| |||| ||||||| | |||| |
|
|
| T |
35768977 |
atctaagtcatcataactcaattttaacacattctgaattttcatttctggaatcttctggagtttttccaattcatttttccatgcttctttacttctt |
35768878 |
T |
|
| Q |
128 |
gaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttcatatccaattttag |
221 |
Q |
| |
|
|||| ||| | ||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||| || |||||||||||| |||||| |
|
|
| T |
35768877 |
gaacgaagacgtgcacccaaaacttttaaagccaaaggattgcctttgcaataggcaataacactttctgagagctcttcatatccacttttag |
35768784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 221
Target Start/End: Original strand, 23401616 - 23401754
Alignment:
| Q |
83 |
ttttgaagcttcttcaattcattttcccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaatagg |
182 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||| | | ||||||||| |||| |||||||||||||| ||| ||| |||| ||||||||||||| |
|
|
| T |
23401616 |
ttttggagctttttcaattcatttttgcatgcttcctagctccttgaactcggattttcacctaaaacttttatagccagatgattgcctttgcaatagg |
23401715 |
T |
|
| Q |
183 |
caattacactttctgatagatcttcatatccaattttag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23401716 |
caattacactttctgatagatcttcatatccagttttag |
23401754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 36003032 - 36003206
Alignment:
| Q |
28 |
atctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcattttcccattcttctttccctctt |
127 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| | |||| | | ||| |||||||||| ||||| | ||||||| |||||||| ||||||| | | || |
|
|
| T |
36003032 |
atctaagtcatcgaaactcaattttagcacatcatgaattctcccattaggaatctttttgagcttttccaattcactttcccatgcttctttgcttttt |
36003131 |
T |
|
| Q |
128 |
gaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgataga |
202 |
Q |
| |
|
| || | ||| | |||||||||||||||||| || ||||| ||| ||||||| ||||| | |||| ||||||| |
|
|
| T |
36003132 |
gtacggaaatttgcacctaaaacttttaaagccaggggattgcctccgcaatagccaattgctctttttgataga |
36003206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 36024126 - 36024341
Alignment:
| Q |
25 |
acaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcattttcccattcttctttccct |
124 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||| | ||| ||| |||||| ||||||| ||||| | || |||| ||||||| ||||||| | | |
|
|
| T |
36024126 |
acaatctaaaccatcaaaacttaattttaacacatcatgaatccttcgattgggtatctttttgagcttttccagttcactttcccacacttctttgctt |
36024225 |
T |
|
| Q |
125 |
cttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttcatatccaattttagctt |
224 |
Q |
| |
|
| | || | ||| | |||||||||||||||| | || ||||| ||| ||||||| ||||| | |||| |||||||||| |||| |||||||||| | |
|
|
| T |
36024226 |
ttggtacgaaaatttgtacctaaaacttttaaacctaggggattgcctccgcaatagccaattgctctttttgatagatctccatacccaattttaggat |
36024325 |
T |
|
| Q |
225 |
gtttatctctgaaagc |
240 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
36024326 |
atttttctctgaaagc |
36024341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 11920 - 12259
Alignment:
| Q |
8 |
aatatggccttttgaaaacaatctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcatttt |
107 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
11920 |
aatatggccttttcagtaaaatctaagtcatcataactcaattttaacacattgtaaatttccccatttggaatctttttgagctttttcaattcatttt |
12019 |
T |
|
| Q |
108 |
cccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttc |
207 |
Q |
| |
|
||||| | ||||| |||||||||| ||||| | |||| |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12020 |
cccatgcctctttgcctcttgaacggagatttgcccctataacttttaaagctagaggattgcctttgcaataggaaattacactttctgatagatcttc |
12119 |
T |
|
| Q |
208 |
atatccaattttagcttgtttatctctgaaagcagacatatttaatagcttaagagaatcatgattgttcagctccttaacctcatactatatatcacat |
307 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| ||| || | | |||| || |||||||||||| ||||||| ||||| || ||| ||||| |||||| |
|
|
| T |
12120 |
atatccaattttaggctgtttttctccgaaggcattcaaactgaataactgaagagaatcatggttgttcaattccttgacttca---tatatgtcacat |
12216 |
T |
|
| Q |
308 |
ttactgaactgactaattatgtgcttatctctagttgcaataa |
350 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
12217 |
ttactgaactgactaaatatatgtttatctctagttgtaataa |
12259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 12896475 - 12896289
Alignment:
| Q |
28 |
atctaagtcatcataactcaattttaacacattgtaaatttttctattgggaatcttttgaagcttcttcaattcattttcccattcttctttccctctt |
127 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||| | | || |||||||||| | ||| | ||||||| || ||||| ||||||| | | || |
|
|
| T |
12896475 |
atctaagtcatcgaaactcaattttaacacatcatgaattctcccataaggaatcttttttatcttttccaattcacttgcccatgcttctttgcttttt |
12896376 |
T |
|
| Q |
128 |
gaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttctgatagatcttcatatcca |
214 |
Q |
| |
|
| || | ||| | |||||||||||| ||||| || ||||| ||| | |||||| ||||| |||| | ||||||||| ||||||||| |
|
|
| T |
12896375 |
gtacgaaaatttgcacctaaaactttcaaagccaggggattgcctctacaatagccaattgcactctttgatagatcctcatatcca |
12896289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 16122325 - 16122441
Alignment:
| Q |
97 |
caattcattttcccattcttctttccctcttgaactcagattagaacctaaaacttttaaagcaagaggatttcctttgcaataggcaattacactttct |
196 |
Q |
| |
|
||||||| |||||||| ||||||| | | ||| || ||||| | |||||||||||| ||||| |||||||| ||| ||||||| ||||| |||||| | |
|
|
| T |
16122325 |
caattcactttcccatgcttctttgctttttgcacaaagattcgcacctaaaactttcaaagctagaggattgcctctgcaatatccaattgcacttttt |
16122424 |
T |
|
| Q |
197 |
gatagatcttcatatcc |
213 |
Q |
| |
|
|| || ||||| ||||| |
|
|
| T |
16122425 |
gagagctcttcgtatcc |
16122441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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