View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_low_7 (Length: 342)
Name: NF19524_low_7
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_7 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 38235606 - 38235288
Alignment:
| Q |
1 |
ttccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
38235606 |
ttccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgtttccggcacggtggcggtggtggtggtggtggagtagctgt |
38235507 |
T |
|
| Q |
101 |
agctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235506 |
agctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttcagaaggttcctcctccaatggttttttcatgatggggtcttttgtaat |
38235407 |
T |
|
| Q |
201 |
ttccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38235406 |
ttccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcaca |
38235307 |
T |
|
| Q |
301 |
gattcctcttcaacaatat |
319 |
Q |
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||||||||||||||||||| |
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| T |
38235306 |
gattcctcttcaacaatat |
38235288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 203 - 318
Target Start/End: Complemental strand, 38644006 - 38643891
Alignment:
| Q |
203 |
ccatattttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacaga |
302 |
Q |
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| T |
38644006 |
ccatattttgcatttgggtcattgtttcttgtgtcaaataaggaacttgttggggtttagaaattggtgtttctttttcaaatagtacctctttcacaga |
38643907 |
T |
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| Q |
303 |
ttcctcttcaacaata |
318 |
Q |
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|||||||||||||||| |
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| T |
38643906 |
ttcctcttcaacaata |
38643891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 13597773 - 13597624
Alignment:
| Q |
1 |
ttccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgt |
100 |
Q |
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|||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||| | || | ||||||||||| ||| |
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| T |
13597773 |
ttccggttatgagttccctctctgatcctttgcttacttgtaacttcgtcttctcttgtttccggcacggtggcagtggc---gatggtggagtagttgt |
13597677 |
T |
|
| Q |
101 |
agctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttca |
153 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13597676 |
agctgtaactcccacctacactgcatggttctgaaatgacagaaatttcttca |
13597624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38644114 - 38644014
Alignment:
| Q |
1 |
ttccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgt |
100 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||| |||| ||||||| | | | |||||||||||||| | |||||| ||||||| |||| |
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| T |
38644114 |
ttccggttctgagttcccactctgatccttcgcttacttgtagcttcgtcttctcatacttacagcacggtggcggcgttggtggtgatggagtaactgt |
38644015 |
T |
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| Q |
101 |
a |
101 |
Q |
| |
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| |
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| T |
38644014 |
a |
38644014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 13597502 - 13597450
Alignment:
| Q |
208 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
260 |
Q |
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|||||||| |||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
13597502 |
ttttgcatacgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
13597450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 37609961 - 37609821
Alignment:
| Q |
1 |
ttccggttctgagttccctctctgatccttcgtttacttgtaacttcatcttctcttgttcccggcacggtggcggcggtagtggtggtggagtagctgt |
100 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
37609961 |
ttccggttatgagttccctctctgatccttcgcttacttgtaacttcgtcttctcttgtttccggcacggtggcgg------------tggagtagctgt |
37609874 |
T |
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| Q |
101 |
agctgtaactctcacctacactgcatgtttctgaaatgacagaaatttcttca |
153 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37609873 |
agctgtaactcccacctacactgcatggttctgaaatgacagaaatttcttca |
37609821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 37609699 - 37609647
Alignment:
| Q |
208 |
ttttgcatttgggtcattgtttcttgtgtcaaatttggaacttgttggggttt |
260 |
Q |
| |
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|||||||| ||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
37609699 |
ttttgcatatgggtcattatttcttatgtcaaatttggaacttgttgaggttt |
37609647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 316
Target Start/End: Original strand, 16823 - 16903
Alignment:
| Q |
236 |
tcaaatttggaacttgttggggtttggaaattggtgtttctgtttcaaatagaacttctttcacagattcctcttcaacaa |
316 |
Q |
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||||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
16823 |
tcaaagttggaacttgttggggtttgaaaattggtgtttctatgtcaaatagaacttctttcacagattcctctgcaacaa |
16903 |
T |
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