View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19524_low_9 (Length: 327)
Name: NF19524_low_9
Description: NF19524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19524_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 2489527 - 2489231
Alignment:
| Q |
11 |
attatactttggtttcttactcacaatctgcctttatgtgcttagaatctctaaatatctatttcattcattttgattttaaattagaaacttctccaag |
110 |
Q |
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| T |
2489527 |
attatactttggtttcttactcacaatctgcctttatgtgcttcgaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaag |
2489428 |
T |
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| Q |
111 |
cctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatcttcttttaccttccaannnnnnnnnnnnnnnnnnnagaaaattcgg |
210 |
Q |
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| T |
2489427 |
cctggtgaaatggtcattgttctcgactcaacaccacttgtctttgcactcatcttcttttaccttccaa---tgctgctgctgctgctagaaaattcgg |
2489331 |
T |
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| Q |
211 |
tgtgttgctgcagcagtattgtttattaactttagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaatat |
310 |
Q |
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| T |
2489330 |
tgtgttgctgcagcagtattgtttattaactttagagaacaaaactttaactctatctgtcaacatattaacatgtggtttagtgagaacatattaatat |
2489231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 5034609 - 5034497
Alignment:
| Q |
65 |
atatctatttcattcattttgattttaaattagaaacttctccaagcctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatc |
164 |
Q |
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| T |
5034609 |
atatctatttcattcatattgatgtgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacacttcatgtctttgcactcatc |
5034510 |
T |
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| Q |
165 |
ttcttttaccttc |
177 |
Q |
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| T |
5034509 |
ttctttttccttc |
5034497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 2524505 - 2524417
Alignment:
| Q |
89 |
ttaaattagaaacttctccaagcctggtgaaatggtcattgttctcgactcaacaccacatgtctttgcactcatcttcttttaccttc |
177 |
Q |
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|||| ||||||||||||| |||| | || |||| | ||||||| | |||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
2524505 |
ttaatttagaaacttctctaagcatagttaaattgacattgttattgactcaacacttcatttctttgcactcatcttcttttgccttc |
2524417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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