View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19525_high_4 (Length: 334)
Name: NF19525_high_4
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 30700821 - 30701051
Alignment:
| Q |
14 |
aaatattgctaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgaggattccaagag-----ataagagccaa |
108 |
Q |
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| T |
30700821 |
aaatattgcaaccactgcaattcacaagagagtctattaagaacacaatattcagttcaaaacttaacttgagtactccaagagatgacataagagccaa |
30700920 |
T |
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| Q |
109 |
taaatacgcagtaaccagaaacaaagtgtcaggtagcaagggaagatgtcaatt-------agcaaactcaaatagcgtcataggagaattcgccaagaa |
201 |
Q |
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| T |
30700921 |
aaaatacgcagtaaccagaaataaagtgtcaggtagtaagggaagatgccaattccaagtaagcaaactcaaatagcgtcataggagaattggccaagaa |
30701020 |
T |
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| Q |
202 |
gaaaagtccctttgttgagaagctcttcaaa |
232 |
Q |
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| T |
30701021 |
gaaaagtccctttgttgagaagctcttcaaa |
30701051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 30702288 - 30702352
Alignment:
| Q |
253 |
ctatgattacaacaattctaccacaaacacaaattcttattcatccaaaccttcgtccttcaatg |
317 |
Q |
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| T |
30702288 |
ctatgattacaacaattctaccacagacacaaattcttattcacccaaaccttcgtccttcaatg |
30702352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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