View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19525_high_9 (Length: 252)
Name: NF19525_high_9
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 28606244 - 28606478
Alignment:
| Q |
1 |
catggacatccactttttatacacttatctgtgacaatggttaatcatgttcgaaaatgtggttaaatttaactatatgcaataacacaatttttaatgt |
100 |
Q |
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| T |
28606244 |
catggacatccactttttatacacttatctgtgacaatggttaatcatgttcgaaaatgtggttaaatttaactatatgcaataacacaatttttaatgt |
28606343 |
T |
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| Q |
101 |
aaaataattatttttgtaagtgtgggagtcatggaatatttttgtttacaatttaacattacgttggtcactttgattcaattaggagcacactcggttg |
200 |
Q |
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| T |
28606344 |
aaaataatt-tttttgtaagtgtgggagtcatggaatatttttgtttacaatttaacattacgttggtcactttgattcaattaggagcacactcggttg |
28606442 |
T |
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| Q |
201 |
gaagagtacattgcacgaatttggtccacagactat |
236 |
Q |
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| T |
28606443 |
gaagagtacattgcatgaatttggtccacagactat |
28606478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 28636192 - 28636263
Alignment:
| Q |
165 |
tggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactat |
236 |
Q |
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| T |
28636192 |
tggtcactttgattaaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactat |
28636263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 28663761 - 28663833
Alignment:
| Q |
164 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactat |
236 |
Q |
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| T |
28663761 |
ttggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactat |
28663833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 28656685 - 28656757
Alignment:
| Q |
164 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactat |
236 |
Q |
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||||||||| ||||| ||| ||||||||| || || ||||||||||| |||| ||| ||||||||||||||| |
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| T |
28656685 |
ttggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactat |
28656757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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