View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19525_low_1 (Length: 394)
Name: NF19525_low_1
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 376
Target Start/End: Complemental strand, 18471926 - 18471563
Alignment:
| Q |
28 |
ataataatgtattttttctatgtctttcattggatatatttgattcagtctggtatttataggcattgtgatcttggctgcaatatacaagaaatgtacc |
127 |
Q |
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| T |
18471926 |
ataataatgtattttttctatgtgtttgattggatatatatgattcagtctggtatttataggcattgtgatcttggctgcattatacgagaaatgtacc |
18471827 |
T |
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| Q |
128 |
atgtatttcatggtaagtttaagaaatattcatttaagggtttagcagaccacacgtaacagattgtagttgatggttgaatgac---------gtcaaa |
218 |
Q |
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| T |
18471826 |
atgtatttcatggtaagtttaagaaatattcatttaagggttttgcagaccacacgtaacagattgtagttgatggttgaatgacatgaacttggtcaaa |
18471727 |
T |
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| Q |
219 |
atgatttaaattattagtgttaaattgcaatgttacccttctttaa------ctttttggagaaggcaatattattatattaataacgatgtttgtatca |
312 |
Q |
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| T |
18471726 |
atgatttaaattattagtgttaaattgcaatgttacccttctttaatttattttttttggagaaggcaatattattatattaataacgatgttagtatca |
18471627 |
T |
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| Q |
313 |
ccattttataattgtctccgatgagatttgaactctggtataaaagttatgtttttactcggat |
376 |
Q |
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| T |
18471626 |
gcattttataattgtctccgatgagatttgaactctagtataaaagttatgtttttactcggat |
18471563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 264
Target Start/End: Complemental strand, 18477543 - 18477298
Alignment:
| Q |
28 |
ataataatgtattttttctatgtctttcattggatatatttgattcagtctggtatttataggcattgtgatcttggctgcaatatacaagaaatgtacc |
127 |
Q |
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| T |
18477543 |
ataataatgtattttttctatgtgtttgattggatatatatgattcagtctagtatttatagacattgtaatcctggctgcaatatacaagaaatgtacc |
18477444 |
T |
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| Q |
128 |
atgtatttcatggtaagtttaagaaatattcatttaagggtttagcagaccacacgtaacagattgtagttgatggttgaatgac---------gtcaaa |
218 |
Q |
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| T |
18477443 |
atgtatttcatggtaagtttaagcaatattcatttaagggttttacataccacacgtaacagattgtagttgatggttgaatgacatgaacttggtcaaa |
18477344 |
T |
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| Q |
219 |
atgatttaaattattagtgttaaattgcaatgttacccttctttaa |
264 |
Q |
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| T |
18477343 |
ataatttaaattatgagtgttaaattgcaatgttacccttctttaa |
18477298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 18476905 - 18476824
Alignment:
| Q |
290 |
tattaataacgatgtttgtatcaccattttataattgtctccgatgagatttgaactctggtataaaagttatgtttttact |
371 |
Q |
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| T |
18476905 |
tattaataacgatgttactatcatcattttataattgtctcatgtgagatttgaactctattataaaagttaagttcttact |
18476824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 15618188 - 15618237
Alignment:
| Q |
213 |
gtcaaaatgatttaaattattagtg-ttaaattgcaatgttacccttctt |
261 |
Q |
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| T |
15618188 |
gtcaaaatgatttaaataattagtgcttaaattgcaatgtcacccttctt |
15618237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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