View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19525_low_3 (Length: 386)
Name: NF19525_low_3
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 24875106 - 24874837
Alignment:
| Q |
8 |
gagcagagaactgagaaacagagcgtgaaacaggggaaggagatagaaactttgcattggttgagctatttcctcgcattaaagcagcatgaagagctct |
107 |
Q |
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| T |
24875106 |
gagcagagaactgagaaacagagcgtgaaacaggggaaggagatagaaactttgcattggttgagctatttcctcgcattaaagcagcatgaagagctct |
24875007 |
T |
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| Q |
108 |
tagttccactgctttggctatagcaaccttaatttcctgtcttgtagtttctgagtttccattgttgttgtctttgaaaacttgtgttgaagtatttgtt |
207 |
Q |
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| T |
24875006 |
tagttccactgctttggctatagcaaccttaatttcctgtcttgtagtttctgagtttccattgttgttgtctttgaaaacttgtgttgaagtatttgtt |
24874907 |
T |
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| Q |
208 |
gcagccatgaaacagaacagagaagcagaacaaaatggaacatgtaaatttcttgaagataataatatta |
277 |
Q |
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| T |
24874906 |
gaagccatgaaacataacagagaaacagaacaaaatggaacatgtaaatttcttgaagataataatatta |
24874837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 24874776 - 24874730
Alignment:
| Q |
320 |
gtggtgttcaattcaacggttggatttgatttgaagactatgtctaa |
366 |
Q |
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| T |
24874776 |
gtggtgttcaattcaacggttggatttgatttgaagactatgtctaa |
24874730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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