View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19525_low_7 (Length: 290)
Name: NF19525_low_7
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 51 - 280
Target Start/End: Complemental strand, 13068839 - 13068610
Alignment:
| Q |
51 |
ttagattcagttaggtgcatgacatttaagtaggtagttgaaagtaagaatcaaatattatttatagtttaatacagatggtttatgactattgtgttaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13068839 |
ttagattcagttaggtgcatgacatttaagtaggtagttgaaagtaagaatcaaatattatttatagtttaatacagatggtttatgactattgtgttaa |
13068740 |
T |
|
| Q |
151 |
tagaaaacaaaactaaaaattatgcaaatttgtttgtttttaaaaacccacttgtactatgcagtagttacaactagtgcttaaatatattgcctcaaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13068739 |
tagaaaacaaaactaaaaattatgcaaatttgtttgttttcaaaaacccacttgtactatgcagtagttacaactagtgcttaaatatattgcctcaaga |
13068640 |
T |
|
| Q |
251 |
aggtgtcaacattatcatcttaatcttctt |
280 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
13068639 |
aggtgtaaacattatcatcttaatcttctt |
13068610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 51 - 274
Target Start/End: Original strand, 13008743 - 13008971
Alignment:
| Q |
51 |
ttagattcagttaggtgcatgacatttaagtaggtagttgaaagtaagaatcaaatatt-atttatagtttaatacagatggtttatgactattgtgtta |
149 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| || |||| | | | | || ||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
13008743 |
ttagattcaattagatgcatgacatttaagtaggtagttgaaggttggaatgatacagtgatccttagtttaatacagatggttcatgacagttgggtta |
13008842 |
T |
|
| Q |
150 |
atagaaaacaaaactaa---aaattatgcaaatttgtttgttttta-aaaacccacttgtactatgcagtagttacaactagtgcttaaatatattgcct |
245 |
Q |
| |
|
|| || ||||||| || || ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
13008843 |
atggagaacaaaagaaaaacaatttatgaaaatttgtttgtttttataaaacctacttgtactatgcagtagttacaacttgtgcttaaatatcttgcct |
13008942 |
T |
|
| Q |
246 |
caagaaggtgtcaacattatcatcttaat |
274 |
Q |
| |
|
||| ||||||| |||| |||| ||||||| |
|
|
| T |
13008943 |
caaaaaggtgtgaacactatcttcttaat |
13008971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 278
Target Start/End: Complemental strand, 13071186 - 13071072
Alignment:
| Q |
165 |
aaaaattatgcaaatttgtttgttttta-aaaacccacttgtactatgcagtagttacaactagtgcttaaatatattgcctcaagaaggtgtcaacatt |
263 |
Q |
| |
|
|||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||||||||| || ||||| || |||| |||| | |
|
|
| T |
13071186 |
aaaaataatgaaaatttgtttgttttcataaaacccacttgtactatgcagtagttataacttgtgcttaaatattttaactcaaaaaagtgtgaacact |
13071087 |
T |
|
| Q |
264 |
atcatcttaatcttc |
278 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
13071086 |
atcttcttaatcttc |
13071072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University