View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19525_low_8 (Length: 259)
Name: NF19525_low_8
Description: NF19525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19525_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1883780 - 1884021
Alignment:
| Q |
1 |
ttaacaaaatgtttgagatattatgccaacaccatcatga-------gtaacatgactaataacaatataatagtaagcaagtctttgatatatattaat |
93 |
Q |
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| T |
1883780 |
ttaacaaaatgtttgatatattatgccaacaccatcatgactcatgagtaacatgactaaaaacaatataatagtaagcaagtgt--gatatatattaat |
1883877 |
T |
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| Q |
94 |
ttaagacaatcagctttaacttttattttggtttttgattaaacaattgtccaactcagaacatcatcaaaagcatctaacaacattctgaacttcaaca |
193 |
Q |
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| T |
1883878 |
ttaagacaatgagctttaacttttattttggtttt-gattata--atggtccaactcaaaacctcatcaaaagcatctaacaacattctgaacttcaaca |
1883974 |
T |
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| Q |
194 |
aggtttgtgattgttgtgtatgggataaaacttagaatacatagaaa |
240 |
Q |
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| T |
1883975 |
aggtttgtgattgttgtatataggataaaacttagaacacatagaaa |
1884021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 1877844 - 1877892
Alignment:
| Q |
89 |
ttaatttaagacaatcagcttt-aacttttattttggtttttgattaaa |
136 |
Q |
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| T |
1877844 |
ttaatttaagacaaccagcttttaactttcattttggtttttgattaaa |
1877892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 1877947 - 1878009
Alignment:
| Q |
178 |
attctgaacttcaacaaggtttgtgattgttgtgtatgggataaaacttagaatacatagaaa |
240 |
Q |
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| T |
1877947 |
attctgaatttcaacaaggtttgccattgttgtgtaaggtatagaacttaaaacacatagaaa |
1878009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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