View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19526_high_1 (Length: 408)

Name: NF19526_high_1
Description: NF19526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19526_high_1
NF19526_high_1
[»] chr5 (7 HSPs)
chr5 (91-408)||(38157237-38157554)
chr5 (91-291)||(29425380-29425582)
chr5 (91-251)||(27918776-27918936)
chr5 (91-291)||(29568183-29568385)
chr5 (91-291)||(1758232-1758434)
chr5 (91-291)||(29168339-29168541)
chr5 (1-90)||(38157905-38157994)
[»] chr3 (1 HSPs)
chr3 (91-291)||(25518568-25518770)
[»] chr4 (4 HSPs)
chr4 (91-287)||(18986188-18986386)
chr4 (91-291)||(27462084-27462286)
chr4 (91-291)||(27521149-27521351)
chr4 (91-291)||(27482223-27482425)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 91 - 408
Target Start/End: Complemental strand, 38157554 - 38157237
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157554 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 38157455  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccaggcatgggtcattgacacagcggcgaagagcat 290  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157454 tcctgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccaggcatgggtcattgacacagcggcgaagagcat 38157355  T
Q  291 tgccagttccgatgatcgacagaaccagtcgacgacccttatacatacttattgaataataaacaaagttaataaagcgtaggaggatcgacagtgatga 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38157354 tgccagttccgatgatcgacagaaccagtcgacgacccttatacatacttattcaataataaacaaagttaataaagcgtaggaggatcgacagtgatga 38157255  T
Q  391 aacacgatcctctttgaa 408  Q
    ||||||||||||||||||    
T  38157254 aacacgatcctctttgaa 38157237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 29425582 - 29425380
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||    
T  29425582 accaatgaatcagattcaggtgtagttttttcagcagagttcaaataacaagaaactgcttctttaaccttataaggatcaataacttcatatatacatc 29425483  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    |||||||  ||||||||||| ||||| ||||||||| |||||| |||||||||||||||| |||| ||  |||||| |||  ||||||||||| ||||||    
T  29425482 tactgatcggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattgattcggcaaggtgcatggatcagagacacagcggctaagagc 29425383  T
Q  289 att 291  Q
    |||    
T  29425382 att 29425380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 27918936 - 27918776
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27918936 accattgaatcagattcaggggtggttttttcagcagagttcaaataacaagaaactgcttctttaacctcagaaggatcaataacttcagatatacatc 27918837  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatc 251  Q
    | |||||  |||| |||||||||||| |||| ||||||||||||||||| |||||||||||    
T  27918836 tcctgatcggagggagaggcggcaaagcagtcgacgaccctttaaccggaatggattgatc 27918776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 91 - 291
Target Start/End: Original strand, 29568183 - 29568385
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||| ||||||||||||||  ||  |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  29568183 accaatgaatcagattcaggggtggttttttcagcagagttcaaataacgagcaactgcttctttaacctcagaaggatcaataacttcagatatacatc 29568282  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    |||||||  ||||||||||| ||||| ||||||||  |||||| ||||||||||||||||||||| ||  |||||| |||  ||||||||||| ||||||    
T  29568283 tactgatcggaggcagaggctgcaaagcagttgacagcccttttaccggcatggattgatccggcaaggtgcatggatcagagacacagcggctaagagc 29568382  T
Q  289 att 291  Q
    |||    
T  29568383 att 29568385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 1758434 - 1758232
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||    
T  1758434 accattgaatcagattcaggggtggttttttcagcagagttcaaataacgagcaactgcttctttaacctcagaaggatcaataacttcagatatacatc 1758335  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    | |||||| ||||||||||| ||||| |||||||   |||||| ||||| ||||||||||| ||| ||  |||||| |||  ||||||||||| ||||||    
T  1758334 tcctgattggaggcagaggctgcaaagcagttgatagcccttttaccggaatggattgatctggcgaggtgcatggatcagagacacagcggctaagagc 1758235  T
Q  289 att 291  Q
    |||    
T  1758234 att 1758232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 29168541 - 29168339
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  || |||||| |||||||||||||  || ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29168541 accattgaatcagattcaggggtggttctttcagaagagttcaaataaagagcaactgcttctttaaccttagaaggatcaataacttcagatatacatc 29168442  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    |||||||  ||||||||||| ||||| ||||||||  |||||| ||||||||||||||||||||| ||  |||||| |||  |||||||| || ||||||    
T  29168441 tactgatcggaggcagaggctgcaaagcagttgacagcccttttaccggcatggattgatccggcaaggtgcatggatcagagacacagcagctaagagc 29168342  T
Q  289 att 291  Q
    |||    
T  29168341 att 29168339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38157994 - 38157905
Alignment:
Q  1 tcatcaagaaaccacatagaactaggaattgaccagttcatcagtacctatatagttgtctttgacacaaaaacacttagaaaccatata 90  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38157994 tcataaagaaaccacatagaactaggaattgaccagttcatgagtacctatatagttgtctttgacacaaaaacacttagaaaccatata 38157905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 25518770 - 25518568
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||    
T  25518770 accattgaatcagattcaggggtggttttttcagcagagttcaaataacaagcaactgcttctttaacctccaaaggatcaataacttcagatatacatc 25518671  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    | |||||  ||||||||||||||||| |||| |||||||||||||||||||| | |||||||||| ||  |||||| |||  |||||||| |||||||||    
T  25518670 tcctgatcggaggcagaggcggcaaagcagtcgacgaccctttaaccggcatagcttgatccggcaaggtgcatggatcagcgacacagcagcgaagagc 25518571  T
Q  289 att 291  Q
    |||    
T  25518570 att 25518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 18986386 - 18986188
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    ||||||||||||||||||   ||  |||||||||||||||||||||||| |  ||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  18986386 accattgaatcagattcaagggtggttttttcagcagagttcaaataacgatcaactgcttctttaacatcagacggatcaataacttcagatatacatc 18986287  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagag 287  Q
    | |||||| ||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||| ||  |||||| |||  ||||||||||| |||||    
T  18986286 tcctgattggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattgatccggcaaggtgcatggatcagagacacagcggctaagag 18986188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 27462286 - 27462084
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||  |||| |||||||||||||| ||||||||||||||||||||||||||    
T  27462286 accattgaatcagattcaggggtggttttttcagcacagttcaaataacgagctactgcttctttaacctcagtaggatcaataacttcagatatacatc 27462187  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    | |||||  ||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||  ||  |||||| |||  ||||||||||| ||||||    
T  27462186 tgctgatcggaggcagaggctgcaaagcagttgacggcccttttaccggcatggattgatccggaaaggtgcatggatcagagacacagcggctaagagc 27462087  T
Q  289 att 291  Q
    |||    
T  27462086 att 27462084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 91 - 291
Target Start/End: Original strand, 27521149 - 27521351
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  |||||| ||||||||||||||||| ||  |||| ||||||||||||| |||||||||||||||||||||||||||    
T  27521149 accattgaatcagattcaggggtggtttttttagcagagttcaaataacgagctactgcttctttaacctcaaaaggatcaataacttcagatatacatc 27521248  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    | |||||  ||||| ||||| ||||| ||||||||| |||||| ||||||||||||||||||||| ||  ||| || |||  ||||||||||| ||||||    
T  27521249 tgctgatcggaggctgaggctgcaaagcagttgacggcccttttaccggcatggattgatccggcaaggtgcaaggatcagagacacagcggctaagagc 27521348  T
Q  289 att 291  Q
    |||    
T  27521349 att 27521351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 291
Target Start/End: Complemental strand, 27482425 - 27482223
Alignment:
Q  91 accattgaatcagattcagatgtaattttttcagcagagttcaaataacaagaaactgtttctttaacctcagaaggatcaataacttcagatatacatc 190  Q
    |||||||||||||||||||  ||  ||||||||||| |||||||||||| ||  |||| |||||||||||||| |||||| |||||||||||||||||||    
T  27482425 accattgaatcagattcaggggtggttttttcagcacagttcaaataacgagctactgcttctttaacctcagtaggatcgataacttcagatatacatc 27482326  T
Q  191 tactgattagaggcagaggcggcaaaccagttgacgaccctttaaccggcatggattgatccggccag--gcatgggtcattgacacagcggcgaagagc 288  Q
    | |||||  ||||||||||| ||||| ||||||||| |||||| || |||||||||||||||||  ||  |||||| |||  ||||||||||| ||||||    
T  27482325 tgctgatcggaggcagaggctgcaaagcagttgacggcccttttactggcatggattgatccggaaaggtgcatggatcagagacacagcggctaagagc 27482226  T
Q  289 att 291  Q
    |||    
T  27482225 att 27482223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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