View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19526_high_3 (Length: 389)

Name: NF19526_high_3
Description: NF19526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19526_high_3
NF19526_high_3
[»] chr1 (9 HSPs)
chr1 (1-258)||(47568033-47568290)
chr1 (207-342)||(47593000-47593135)
chr1 (218-342)||(47607276-47607400)
chr1 (207-342)||(47287550-47287685)
chr1 (220-342)||(47574570-47574692)
chr1 (270-348)||(47701365-47701443)
chr1 (270-342)||(47640635-47640707)
chr1 (224-357)||(47627172-47627305)
chr1 (270-342)||(47758521-47758593)
[»] chr6 (12 HSPs)
chr6 (215-388)||(21968219-21968392)
chr6 (218-388)||(22086103-22086273)
chr6 (221-385)||(18991004-18991168)
chr6 (218-385)||(18979652-18979819)
chr6 (218-388)||(22206789-22206959)
chr6 (218-388)||(18995724-18995894)
chr6 (218-388)||(20236046-20236216)
chr6 (218-388)||(22130030-22130200)
chr6 (218-385)||(20083948-20084115)
chr6 (218-385)||(24386894-24387061)
chr6 (221-343)||(20233192-20233314)
chr6 (221-343)||(22127176-22127298)
[»] scaffold0007 (1 HSPs)
scaffold0007 (218-388)||(7110-7280)
[»] scaffold0074 (1 HSPs)
scaffold0074 (220-388)||(49567-49735)
[»] chr8 (1 HSPs)
chr8 (219-343)||(10401677-10401801)
[»] chr5 (3 HSPs)
chr5 (212-349)||(470067-470204)
chr5 (267-348)||(9102756-9102837)
chr5 (224-349)||(454542-454667)
[»] chr3 (2 HSPs)
chr3 (293-348)||(13855152-13855207)
chr3 (272-349)||(1077346-1077423)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 47568033 - 47568290
Alignment:
Q  1 ttgtcttcatggacaagagtctggattactttttacttggttagtactttttactgtaattacagttcaactcttaagttaaatagacatatgtccttgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47568033 ttgtcttcatggacaagagtctggattactttttacttggttagtactttttactgtaattacagttcaactcttaagttaaatagacatatgttcttgc 47568132  T
Q  101 aagatgatgtatcttcgaatctgaaattgaaaactcactaaattcattcatttaccttcccttgaagatcctttgaagagaagacaattaaattggtaca 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47568133 aagatgatgtatcttcgaatctgaaattgaaaactcgctaaattcattcgtttaccttcccttgaagatcctttgaagagaagacaattaaattggtaca 47568232  T
Q  201 aaaggcacaagattattggaggaattgctcgaggaattctttatttgcatgagcattc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  47568233 aaaggcacaagattattggaggaattgctcgaggaattctttatctccatgaggattc 47568290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 47593000 - 47593135
Alignment:
Q  207 acaagattattggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctatt 306  Q
    |||| ||||| |||||||  |||  |||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||| ||||| |    
T  47593000 acaaaattataggaggaacggctttaggaattctttatttgcatgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgttctact 47593099  T
Q  307 agatgaaaatatgattcctaaaatttcagattttgg 342  Q
     ||||||||||||| ||||||||| |||||||||||    
T  47593100 ggatgaaaatatgaatcctaaaatatcagattttgg 47593135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 47607276 - 47607400
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    ||||||| ||||  |||| |||||||||| |||||  |||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |||    
T  47607276 ggaggaactgctttaggagttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagatgaacata 47607375  T
Q  318 tgattcctaaaatttcagattttgg 342  Q
    ||| ||||||||| |||||||||||    
T  47607376 tgaatcctaaaatctcagattttgg 47607400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 47287550 - 47287685
Alignment:
Q  207 acaagattattggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctatt 306  Q
    ||||||| || | ||||||||| || ||||| |||||| | || ||  |||||||||| | | | |||||||||||||| ||| ||||||||||  ||||    
T  47287550 acaagataatagaaggaattgcccgtggaatgctttatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattatt 47287649  T
Q  307 agatgaaaatatgattcctaaaatttcagattttgg 342  Q
    |||||| ||| | | ||| |||||||||||||||||    
T  47287650 agatgagaatttaaatcccaaaatttcagattttgg 47287685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 47574570 - 47574692
Alignment:
Q  220 aggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatg 319  Q
    |||| |||| || |||||||||||| | |||||  ||||||| |||||| | |||||||| ||||| ||||||||  || | || |||||||  ||||||    
T  47574570 aggagttgcccgtggaattctttatctccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatg 47574669  T
Q  320 attcctaaaatttcagattttgg 342  Q
    | ||| ||||| |||||||||||    
T  47574670 aatccaaaaatatcagattttgg 47574692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 47701443 - 47701365
Alignment:
Q  270 ttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggc 348  Q
    |||||||||| ||||| ||| | ||||| ||||| || |||||||| |||| ||||||||| |||||||||||| ||||    
T  47701443 ttatacatcgtgatcttaaagcaagtaacattctcttggatgaaaaaatgaatcctaaaatatcagattttggtatggc 47701365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 47640635 - 47640707
Alignment:
Q  270 ttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttgg 342  Q
    |||| ||||| ||||||||| | || ||| |||||||||||||||||||||  || || ||||||||||||||    
T  47640635 ttattcatcgtgatctcaaagccagcaatgttctattagatgaaaatatgaacccaaagatttcagattttgg 47640707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 357
Target Start/End: Original strand, 47627172 - 47627305
Alignment:
Q  224 attgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattc 323  Q
    ||||||||||||||||||||  | |||||  ||||||| |||||  ||||||| || ||| | ||||| || ||| ||||  ||||| | ||||||| ||    
T  47627172 attgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgttcttctagataacaatatgaatc 47627271  T
Q  324 ctaaaatttcagattttggtttggcacggatggt 357  Q
    | ||||| || ||||||||  ||||| |||||||    
T  47627272 caaaaatctctgattttggcatggcaaggatggt 47627305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 47758593 - 47758521
Alignment:
Q  270 ttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttgg 342  Q
    |||||||||| ||||| ||| | ||||| ||||| ||||| |||||  ||| ||||||||| |||||||||||    
T  47758593 ttatacatcgtgatcttaaagcgagtaacattctcttagacgaaaagttgaatcctaaaatatcagattttgg 47758521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 215 - 388
Target Start/End: Complemental strand, 21968392 - 21968219
Alignment:
Q  215 attggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968392 attggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaa 21968293  T
Q  315 atatgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968292 atatgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 21968219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 22086273 - 22086103
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22086273 ggaggaattgctggaggaattctttatttgcatgaacattctcgactcaaagttatacatcgtgatctcaaaccaagtaatattctattagatgaaaata 22086174  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  22086173 tgattcctagaatttcagattttggtttggcacgaatggtcgaaataagtcaagacgaaggaagtacaaat 22086103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 221 - 385
Target Start/End: Complemental strand, 18991168 - 18991004
Alignment:
Q  221 ggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatga 320  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  18991168 ggaattgttcgaggacttctttatttgcatgaacattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaatatga 18991069  T
Q  321 ttcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtaca 385  Q
    |||||||||||||||||||||||||||| || ||  | |||||||||||||| || |||||||||    
T  18991068 ttcctaaaatttcagattttggtttggctcgaattattgaaataagtcaagatgagggaagtaca 18991004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 218 - 385
Target Start/End: Complemental strand, 18979819 - 18979652
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||||    
T  18979819 ggaggaattgttcgtggacttctttatttgcatgaacattctcgactcaaagttatacatcgggatgtcaaacctagcaatattctattagacgaaaata 18979720  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtaca 385  Q
    ||||||||||||||||||||||||||||||| || || || |||||||||||||| || |||||||||    
T  18979719 tgattcctaaaatttcagattttggtttggctcgaattgttgaaataagtcaagatgagggaagtaca 18979652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 218 - 388
Target Start/End: Original strand, 22206789 - 22206959
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    ||||| |||| | |||| |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  22206789 ggaggtattgtttgagggattctttatttgcatgaaaattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattagatgaaaata 22206888  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    |||||||||||||||| |||||||||||||| || || || |||||||||||||| || ||||||||||||    
T  22206889 tgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagacgagggaagtacaaat 22206959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 18995894 - 18995724
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| | |||||||    
T  18995894 ggaggaattgttcgagggattctttatttgcatgaacattctcgactaaaagttatacatcgggatctcaaacctagcaatattctattatacgaaaata 18995795  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    ||||||||||||||||||||||||||||||| || || || ||||| |||||||| || |||| |||||||    
T  18995794 tgattcctaaaatttcagattttggtttggctcgaattgttgaaattagtcaagatgagggaaatacaaat 18995724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 20236216 - 20236046
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    ||||||||||  ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  20236216 ggaggaattgtccgagggattctttatttgcatgatcattcacggctcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaata 20236117  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    |||||||||||||||| |||||||||||||| || || || |||||||||||||| || ||||||||||||    
T  20236116 tgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacaaat 20236046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 218 - 388
Target Start/End: Complemental strand, 22130200 - 22130030
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    ||||||||||  ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  22130200 ggaggaattgtccgagggattctttatttgcatgatcattcacggctcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaata 22130101  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    |||||||||||||||| |||||||||||||| || || || |||||||||||||| || ||||||||||||    
T  22130100 tgattcctaaaatttctgattttggtttggctcgaattgttgaaataagtcaagatgagggaagtacaaat 22130030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 218 - 385
Target Start/End: Complemental strand, 20084115 - 20083948
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||| ||||||| |||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||| |||||||    
T  20084115 ggaggaattgttcgaggacttctttatttgcatgaacattcccgactgaaagttatacaccgggatctcaaacctagcaatattctattagacgaaaata 20084016  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtaca 385  Q
    ||||| ||||||||||||||||||||||||| || || || |||||||||||||| || |||||||||    
T  20084015 tgattactaaaatttcagattttggtttggctcgaattgttgaaataagtcaagatgagggaagtaca 20083948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 218 - 385
Target Start/End: Original strand, 24386894 - 24387061
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||  ||||||||||||| |||||||||||||| |||||||    
T  24386894 ggaggaattgctcgaggacttctttatttgcatgaacattctcgacttaaagttatacatcggaatctcaaacctagcaatattctattagacgaaaata 24386993  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtaca 385  Q
    ||||| ||||||||||| |||||| |||||| || || || ||||||| |||| | || |||||||||    
T  24386994 tgatttctaaaatttcatattttgttttggctcgaattgttgaaataattcaatatgagggaagtaca 24387061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 20233192 - 20233314
Alignment:
Q  221 ggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatga 320  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| |||||||||| || ||||    
T  20233192 ggaattgctcaaggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatga 20233291  T
Q  321 ttcctaaaatttcagattttggt 343  Q
    |||| ||||| ||||||||||||    
T  20233292 ttccaaaaatatcagattttggt 20233314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 221 - 343
Target Start/End: Original strand, 22127176 - 22127298
Alignment:
Q  221 ggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatga 320  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||| |||||||||| || ||||    
T  22127176 ggaattgctcaaggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatga 22127275  T
Q  321 ttcctaaaatttcagattttggt 343  Q
    |||| ||||| ||||||||||||    
T  22127276 ttccaaaaatatcagattttggt 22127298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 218 - 388
Target Start/End: Original strand, 7110 - 7280
Alignment:
Q  218 ggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaata 317  Q
    |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  7110 ggaggaattgttcgagggattctttatttgcatgatcattcacgactcaaagttatacatcgggatctcaaacctagcaatattctattagacgaaaata 7209  T
Q  318 tgattcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| || |||| |||||||    
T  7210 tgattcctaaaatttcagattttggtttggctcggattgttgaaataagtcaagatgagggaaatacaaat 7280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 220 - 388
Target Start/End: Original strand, 49567 - 49735
Alignment:
Q  220 aggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatg 319  Q
    |||||||| | |||| |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||||||  | |||||||||    
T  49567 aggaattgttagagggattctttatttgcatgaatattctcgactcaaagttatacatcgggatctcaaacctagcaatattctattgaacgaaaatatg 49666  T
Q  320 attcctaaaatttcagattttggtttggcacggatggtcgaaataagtcaagaggaaggaagtacaaat 388  Q
    ||||||||||||||||||||||||||||| || || || ||||| |||||||| || |||| |||||||    
T  49667 attcctaaaatttcagattttggtttggctcgaattgttgaaattagtcaagatgagggaaatacaaat 49735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 10401801 - 10401677
Alignment:
Q  219 gaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatat 318  Q
    |||||||||||| ||||||| | ||||| ||||| |||||||||||||||||||| || || || |||||||||||||||||| ||||||||||||||||    
T  10401801 gaggaattgctcaaggaattatctatttacatgaacattctcgactcaaagttattcaccgtgacctcaaacctagtaatattttattagatgaaaatat 10401702  T
Q  319 gattcctaaaatttcagattttggt 343  Q
    |||||| ||||| ||||||||||||    
T  10401701 gattccaaaaatatcagattttggt 10401677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 470204 - 470067
Alignment:
Q  212 attattggaggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatg 311  Q
    ||||||||||||||||| |||||||||||||| || |||||| ||||  |||| ||||| |||||||| |||||||||||||| ||| |  | |||||||    
T  470204 attattggaggaattgcacgaggaattctttacttacatgagtattcaagacttaaagtcatacatcgagatctcaaacctagcaatgtattgttagatg 470105  T
Q  312 aaaatatgattcctaaaatttcagattttggtttggca 349  Q
    | || |||| ||| ||||| ||||||||||||||||||    
T  470104 acaaaatgaatccaaaaatatcagattttggtttggca 470067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 9102756 - 9102837
Alignment:
Q  267 aagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggc 348  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  9102756 aagttatacatagcgatctcaaacctagtaatattccattagctgaaaatatgactcctaaaattttagattttggtttggc 9102837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 454667 - 454542
Alignment:
Q  224 attgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattc 323  Q
    ||||| ||||| |||| ||| || ||||| || ||  |||| ||||| |||||||| |||||||||||||| |||||  | |||||| | ||||||| ||    
T  454667 attgcacgagggattcattacttacatgatcaatcaagacttaaagtcatacatcgtgatctcaaacctagcaatatattgttagataagaatatgaatc 454568  T
Q  324 ctaaaatttcagattttggtttggca 349  Q
    | ||||| ||||| |||||| |||||    
T  454567 caaaaatatcagactttggtatggca 454542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 13855152 - 13855207
Alignment:
Q  293 agtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggc 348  Q
    ||||||||| ||||||||||  |||||| ||| |||||||||||||||||| ||||    
T  13855152 agtaatattttattagatgacgatatgaatcccaaaatttcagattttggtatggc 13855207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Original strand, 1077346 - 1077423
Alignment:
Q  272 atacatcgcgatctcaaacctagtaatattctattagatgaaaatatgattcctaaaatttcagattttggtttggca 349  Q
    |||||||| ||||| ||||| ||||||||| |||||||  |  |||||| ||| ||||| ||||||||||| ||||||    
T  1077346 atacatcgagatctaaaaccaagtaatattttattagacaatgatatgaatccaaaaatatcagattttggcttggca 1077423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University