View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19526_high_5 (Length: 285)
Name: NF19526_high_5
Description: NF19526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19526_high_5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 28240133 - 28240417
Alignment:
| Q |
1 |
ccttaattaggtgttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcct |
100 |
Q |
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| T |
28240133 |
ccttaattgggtgttcatgcattgaaatctggcgaggaacaaaaattatacttgatctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcct |
28240232 |
T |
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| Q |
101 |
gacactgacatgtaattacatctaattactgctattttcacaatttataattggtgtttacgtgacagtgtcaatgcttcatagcatttgaccacaaaga |
200 |
Q |
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| T |
28240233 |
gacactcacaagtaattacatctaattactgctattttcacaatttataattggtgtttacgtgccagtgtcaatgcttcatagcatttgaccacaaaga |
28240332 |
T |
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| Q |
201 |
ttacctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgacgcaaacttaatattttcatgcgaaaattc |
285 |
Q |
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| T |
28240333 |
ttgcctttaaatagggactttgtagttactttcccatcagaagttctagtcgtgaagcaaacttaatattttcatgcaaaaattc |
28240417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 21158182 - 21158113
Alignment:
| Q |
17 |
atgcattgaaatctggcgaggaacaaaaatt-acacttgacctatgtagcaccgacacttcaagttgaag |
85 |
Q |
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| T |
21158182 |
atgcattgaaatctggtgaggaacacaaatttacatttgacctatgtaacaccaacacttcaaattgaag |
21158113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 28232548 - 28232602
Alignment:
| Q |
14 |
ttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcacc |
68 |
Q |
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| T |
28232548 |
ttcatgcattaaaatctggcaaggaacaaaaattatatttgacctacgtagcacc |
28232602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 282
Target Start/End: Original strand, 4745597 - 4745705
Alignment:
| Q |
175 |
tgcttcatagcatttgaccacaaagattacctttaaatagggactttgtagttactttcccatcagaagtt-ctagtcgtgacgcaaacttaatattttc |
273 |
Q |
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| T |
4745597 |
tgcttcaaaacatttgaccaccaagaatgccttgaaatagggacttcgtagtcggtttcccatcacaagttactagttcggaagcaaatttaatattttg |
4745696 |
T |
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| Q |
274 |
atgcgaaaa |
282 |
Q |
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| T |
4745697 |
atgcaaaaa |
4745705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 28232753 - 28232861
Alignment:
| Q |
171 |
tcaatgcttcatagcatttgaccacaaagattacctttaaatagggac-tttgtagttactttcccatcagaagtt-ctagtcgtgacgcaaacttaata |
268 |
Q |
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|||||||||||||| |||||||| | |||| |||| |||||||||| |||||| | ||||||||| ||||| ||||| | || |||||||||||| |
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| T |
28232753 |
tcaatgcttcatagtgtttgaccaacatgatttccttgaaatagggacttttgtaatctgtttcccatcttaagttactagtagggaagcaaacttaata |
28232852 |
T |
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| Q |
269 |
ttttcatgc |
277 |
Q |
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| T |
28232853 |
ttttcatgc |
28232861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 1637954 - 1638033
Alignment:
| Q |
17 |
atgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatg |
97 |
Q |
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| T |
1637954 |
atgcattgaaatctgg-gaggaacacaaattacatttgacctataaaacaccgacactttaaattgaagacgtatccaatg |
1638033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 43163938 - 43163975
Alignment:
| Q |
58 |
tatgtagcaccgacacttcaagttgaaggcgtgtccaa |
95 |
Q |
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| T |
43163938 |
tatgtagcaccgacacttcaagttgaagttgtgtccaa |
43163975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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