View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19526_low_2 (Length: 396)

Name: NF19526_low_2
Description: NF19526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19526_low_2
NF19526_low_2
[»] chr2 (17 HSPs)
chr2 (10-195)||(33824449-33824625)
chr2 (303-344)||(33824736-33824777)
chr2 (9-48)||(38983010-38983049)
chr2 (348-381)||(11052272-11052305)
chr2 (340-380)||(33146752-33146792)
chr2 (9-48)||(32457224-32457263)
chr2 (342-381)||(34173762-34173801)
chr2 (350-381)||(38972458-38972489)
chr2 (347-381)||(37199648-37199682)
chr2 (349-381)||(11796858-11796890)
chr2 (9-45)||(12873821-12873857)
chr2 (349-381)||(17829737-17829769)
chr2 (349-381)||(33146028-33146060)
chr2 (349-381)||(34247376-34247408)
chr2 (349-381)||(34248111-34248143)
chr2 (341-381)||(37329685-37329725)
chr2 (349-381)||(43657641-43657673)
[»] chr4 (23 HSPs)
chr4 (9-48)||(25477556-25477595)
chr4 (338-381)||(47029800-47029843)
chr4 (338-381)||(23265833-23265876)
chr4 (349-380)||(26705028-26705059)
chr4 (346-380)||(722029-722063)
chr4 (347-381)||(7166127-7166161)
chr4 (347-381)||(7797662-7797696)
chr4 (347-381)||(16960197-16960231)
chr4 (347-381)||(35854279-35854313)
chr4 (10-48)||(36132646-36132684)
chr4 (348-381)||(13771711-13771744)
chr4 (9-46)||(21554122-21554159)
chr4 (347-380)||(32448990-32449023)
chr4 (348-381)||(33032864-33032897)
chr4 (9-46)||(41328720-41328757)
chr4 (9-45)||(3162993-3163029)
chr4 (349-381)||(8193039-8193071)
chr4 (349-381)||(10155497-10155529)
chr4 (349-381)||(10156027-10156059)
chr4 (349-381)||(13392800-13392832)
chr4 (349-381)||(13395939-13395971)
chr4 (345-381)||(19314062-19314098)
chr4 (349-381)||(47030531-47030563)
[»] chr1 (15 HSPs)
chr1 (347-379)||(36509738-36509770)
chr1 (9-48)||(7375193-7375232)
chr1 (9-48)||(8971326-8971365)
chr1 (346-381)||(16536362-16536397)
chr1 (11-45)||(27819325-27819359)
chr1 (347-381)||(36604718-36604752)
chr1 (347-381)||(41575165-41575199)
chr1 (340-381)||(15357648-15357689)
chr1 (348-381)||(46683741-46683774)
chr1 (9-49)||(15343035-15343075)
chr1 (349-381)||(22094495-22094527)
chr1 (349-381)||(33126178-33126210)
chr1 (9-49)||(38737941-38737981)
chr1 (349-381)||(45737993-45738025)
chr1 (349-381)||(52505287-52505319)
[»] chr8 (12 HSPs)
chr8 (9-48)||(8793817-8793856)
chr8 (342-381)||(11141110-11141149)
chr8 (346-381)||(39998363-39998398)
chr8 (9-48)||(43332659-43332698)
chr8 (11-49)||(8803328-8803366)
chr8 (347-381)||(25597767-25597801)
chr8 (348-381)||(34364627-34364660)
chr8 (349-381)||(3075302-3075334)
chr8 (349-381)||(6292510-6292542)
chr8 (349-381)||(11759384-11759416)
chr8 (349-381)||(13439385-13439417)
chr8 (349-381)||(22934285-22934317)
[»] chr7 (17 HSPs)
chr7 (338-381)||(32867951-32867993)
chr7 (347-381)||(2146923-2146957)
chr7 (11-49)||(2680868-2680906)
chr7 (347-381)||(8122619-8122653)
chr7 (9-46)||(28298952-28298989)
chr7 (340-381)||(31221504-31221545)
chr7 (349-381)||(6184646-6184678)
chr7 (349-381)||(6185381-6185413)
chr7 (349-381)||(6191897-6191929)
chr7 (349-381)||(11639890-11639922)
chr7 (349-381)||(20260998-20261030)
chr7 (349-381)||(25606918-25606950)
chr7 (349-381)||(27144175-27144207)
chr7 (349-381)||(30738184-30738216)
chr7 (349-381)||(36847826-36847858)
chr7 (345-381)||(38669985-38670021)
chr7 (349-381)||(38670732-38670764)
[»] chr6 (14 HSPs)
chr6 (346-381)||(7127706-7127741)
chr6 (346-381)||(14873008-14873043)
chr6 (339-381)||(25527713-25527755)
chr6 (348-381)||(9241588-9241621)
chr6 (12-45)||(10283308-10283341)
chr6 (348-381)||(12025509-12025542)
chr6 (348-381)||(14313184-14313217)
chr6 (9-46)||(30627921-30627958)
chr6 (9-45)||(9077684-9077720)
chr6 (349-381)||(11522793-11522825)
chr6 (349-381)||(11523526-11523558)
chr6 (349-381)||(12693839-12693871)
chr6 (9-49)||(17265731-17265771)
chr6 (349-381)||(33950219-33950251)
[»] chr5 (10 HSPs)
chr5 (349-380)||(13685962-13685993)
chr5 (350-381)||(31477013-31477044)
chr5 (346-380)||(4876701-4876735)
chr5 (347-381)||(20541030-20541064)
chr5 (347-381)||(20691106-20691140)
chr5 (348-381)||(32458593-32458626)
chr5 (348-381)||(37333896-37333929)
chr5 (349-381)||(9119596-9119628)
chr5 (349-381)||(24625543-24625575)
chr5 (349-381)||(27979948-27979980)
[»] chr3 (20 HSPs)
chr3 (346-381)||(4558787-4558822)
chr3 (346-381)||(14601413-14601448)
chr3 (342-381)||(37183067-37183106)
chr3 (9-48)||(50354334-50354373)
chr3 (348-381)||(5984957-5984990)
chr3 (348-381)||(7725454-7725487)
chr3 (9-46)||(9197094-9197131)
chr3 (348-381)||(10688783-10688816)
chr3 (348-381)||(10887705-10887738)
chr3 (348-381)||(18365329-18365362)
chr3 (348-381)||(22130445-22130478)
chr3 (348-381)||(25481246-25481279)
chr3 (348-381)||(27394247-27394280)
chr3 (352-381)||(44951034-44951063)
chr3 (9-46)||(52865049-52865086)
chr3 (349-381)||(3090466-3090498)
chr3 (349-381)||(10888452-10888484)
chr3 (349-381)||(14602158-14602190)
chr3 (349-381)||(18364626-18364658)
chr3 (349-381)||(27256022-27256054)
[»] scaffold0340 (1 HSPs)
scaffold0340 (348-381)||(12908-12941)
[»] scaffold0289 (1 HSPs)
scaffold0289 (348-381)||(3401-3434)
[»] scaffold0201 (1 HSPs)
scaffold0201 (340-381)||(15377-15418)
[»] scaffold0105 (2 HSPs)
scaffold0105 (348-381)||(19059-19092)
scaffold0105 (349-381)||(19695-19727)
[»] scaffold0460 (1 HSPs)
scaffold0460 (349-381)||(13450-13482)
[»] scaffold0102 (1 HSPs)
scaffold0102 (349-381)||(27051-27083)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 33824449 - 33824625
Alignment:
Q  10 caatgaatcagaaaagtcaaatattttttataaataggattaaaggaagtaatttccttcaacaaaaaacgtatttatctttatcg-aaacatcaatcca 108  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||| |||| | ||||| |||||||    
T  33824449 caatgaatcagaaaagtcaaatatttcttataaatataattaaaggaaataatttccttcaacaaaaaacgtatttatccttattgaaaacaccaatcca 33824548  T
Q  109 tgtaacaaaacnnnnnnnnnnctagcctattttaattactagcgtctaagggtattagttaccattttcttgtaaaatagaattatg 195  Q
    | ||| ||||           |||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||    
T  33824549 tataaaaaaa-------aaaactagcctattttaat---taacgtctaagggtattagttaccattttcttgtaaaatagaattatg 33824625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 33824736 - 33824777
Alignment:
Q  303 gttgactacgcaagttttgagattttagtttgaacaaataaa 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  33824736 gttgactacacaagttttgagattttagtttgaacaaataaa 33824777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 38983049 - 38983010
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  38983049 gcaatgaatcaaaaaagtcaaatattttttataaatagga 38983010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 11052305 - 11052272
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||||||||||||    
T  11052305 aagagtaaattacactcccctctcctcaaagatg 11052272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 33146792 - 33146752
Alignment:
Q  340 ataaattaaagagtaaattacactcccctctcctcaaagat 380  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  33146792 ataaatgaaagagtaaattacactcccctcccctcaaagat 33146752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 32457263 - 32457224
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  32457263 gcaatgaatcaaaaaagtcaaatatttcttataaatagga 32457224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 34173801 - 34173762
Alignment:
Q  342 aaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  34173801 aaataaaagagtaaattacactcccctcccctcaaagatg 34173762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 38972458 - 38972489
Alignment:
Q  350 gagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||||||||||    
T  38972458 gagtaaattacactcccctctcctcaaagatg 38972489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 37199682 - 37199648
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  37199682 aaagagtaaattacactcccctcccctcaaagatg 37199648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 11796890 - 11796858
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  11796890 agagtaaattacactcccctcccctcaaagatg 11796858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 12873821 - 12873857
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaata 45  Q
    |||||||||||  ||||||||||||||||||||||||    
T  12873821 gcaatgaatcaataaagtcaaatattttttataaata 12873857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 17829769 - 17829737
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  17829769 agagtaaattacactcccctcccctcaaagatg 17829737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 33146028 - 33146060
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  33146028 agagtaaattacactcccctcccctcaaagatg 33146060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 34247376 - 34247408
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  34247376 agagtaaattacactcccctcccctcaaagatg 34247408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 34248143 - 34248111
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  34248143 agagtaaattacactcccctcccctcaaagatg 34248111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 37329685 - 37329725
Alignment:
Q  341 taaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  37329685 taaaataaagagtaaattacactcccctcctctcaaagatg 37329725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 43657673 - 43657641
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  43657673 agagtaaattacactcccctcccctcaaagatg 43657641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 25477595 - 25477556
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  25477595 gcaatgaatcaaaaaagtcaaatattttttataaatagga 25477556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 47029800 - 47029843
Alignment:
Q  338 aaataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  47029800 aaataaaataaagagtaaattacactcccctcccctcaaagatg 47029843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 23265876 - 23265833
Alignment:
Q  338 aaataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||    
T  23265876 aaataaataaaagagtaaattacacttccctcccctcaaagatg 23265833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 380
Target Start/End: Original strand, 26705028 - 26705059
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagat 380  Q
    ||||||||||||||||||||||||||||||||    
T  26705028 agagtaaattacactcccctctcctcaaagat 26705059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 722063 - 722029
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagat 380  Q
    |||||||||||||||||||||||| ||||||||||    
T  722063 taaagagtaaattacactcccctcccctcaaagat 722029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 7166161 - 7166127
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  7166161 aaagagtaaattacactcccctcccctcaaagatg 7166127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 7797696 - 7797662
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  7797696 aaagagtaaattacactcccctcccctcaaagatg 7797662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 16960197 - 16960231
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||| |||||||||    
T  16960197 aaagagtaaattacactcccctctcttcaaagatg 16960231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 35854313 - 35854279
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||| |||||||||    
T  35854313 aaagagtaaattacactcccctctcttcaaagatg 35854279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 36132684 - 36132646
Alignment:
Q  10 caatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36132684 caatgaatcaaaaaagtcaaatatttcttataaatagga 36132646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 13771711 - 13771744
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  13771711 aagagtaaattacactcccctcccctcaaagatg 13771744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 21554159 - 21554122
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21554159 gcaatgaatcgaaaaagtcaaatattttttataaatag 21554122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 32449023 - 32448990
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagat 380  Q
    |||||||||||||||||| |||||||||||||||    
T  32449023 aaagagtaaattacactcacctctcctcaaagat 32448990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 33032897 - 33032864
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  33032897 aagagtaaattacactcccctcccctcaaagatg 33032864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 41328720 - 41328757
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  41328720 gcaatgaatcaaaaaagtcaaatatttcttataaatag 41328757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 3162993 - 3163029
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaata 45  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  3162993 gcaatgaatcaaaaaagtcaaatgttttttataaata 3163029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 8193071 - 8193039
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  8193071 agagtaaattacactcccctcccctcaaagatg 8193039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 10155497 - 10155529
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  10155497 agagtaaattacactcccctcccctcaaagatg 10155529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 10156059 - 10156027
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  10156059 agagtaaattacactcccctcccctcaaagatg 10156027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 13392832 - 13392800
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  13392832 agagtaaattacactcccctcccctcaaagatg 13392800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 13395971 - 13395939
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  13395971 agagtaaattacactcccctcccctcaaagatg 13395939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 19314098 - 19314062
Alignment:
Q  345 ttaaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  19314098 ttaaagagtaaattacacttccctcccctcaaagatg 19314062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 47030563 - 47030531
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  47030563 agagtaaattacactcccctcccctcaaagatg 47030531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 36509738 - 36509770
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaaga 379  Q
    |||||||||||||||||||||||||||||||||    
T  36509738 aaagagtaaattacactcccctctcctcaaaga 36509770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 7375232 - 7375193
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  7375232 gcaatgattcaaaaaagtcaaatattttttataaatagga 7375193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 8971326 - 8971365
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  8971326 gcaatgaatcaaaaaagtcaaatatttcttataaatagga 8971365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 16536362 - 16536397
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  16536362 taaagagtaaattacactcccctcccctcaaagatg 16536397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 27819359 - 27819325
Alignment:
Q  11 aatgaatcagaaaagtcaaatattttttataaata 45  Q
    ||||||||| |||||||||||||||||||||||||    
T  27819359 aatgaatcaaaaaagtcaaatattttttataaata 27819325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 36604718 - 36604752
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  36604718 aaagagtaaattacactcccctcccctcaaagatg 36604752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 41575165 - 41575199
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  41575165 aaagagtaaattacactcccctcccctcaaagatg 41575199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 15357689 - 15357648
Alignment:
Q  340 ataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  15357689 ataatttaaagagtaaattacactcccctcccctcaatgatg 15357648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 46683774 - 46683741
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||| |||||||||||||||||    
T  46683774 aagagtaaattacactaccctctcctcaaagatg 46683741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 15343035 - 15343075
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaataggat 49  Q
    ||||||||||| |||| |||||||||| |||||||||||||    
T  15343035 gcaatgaatcaaaaaaatcaaatatttcttataaataggat 15343075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 22094527 - 22094495
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  22094527 agagtaaattacactcccctcccctcaaagatg 22094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 33126178 - 33126210
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||| ||||||||||||||||||    
T  33126178 agagtaaattacacccccctctcctcaaagatg 33126210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38737981 - 38737941
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaataggat 49  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  38737981 gcaatgaatcaaaaaagtcaaatgtttcttataaataggat 38737941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 45737993 - 45738025
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  45737993 agagtaaattacactcccctcccctcaaagatg 45738025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 52505287 - 52505319
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  52505287 agagtaaattacactcccctcccctcaaagatg 52505319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 8793817 - 8793856
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  8793817 gcaatgaatcaaaaaagtcaaatatttcttataaatagga 8793856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 11141149 - 11141110
Alignment:
Q  342 aaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  11141149 aaataaaagagtaaattacactcccctcccctcaaagatg 11141110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 39998363 - 39998398
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  39998363 taaagagtaaattacactcccctcccctcaaagatg 39998398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 43332659 - 43332698
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  43332659 gcaatgaatcaaaaaaatcaaatattttttataaatagga 43332698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 8803328 - 8803366
Alignment:
Q  11 aatgaatcagaaaagtcaaatattttttataaataggat 49  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  8803328 aatgaatcaaaaaagttaaatattttttataaataggat 8803366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 25597767 - 25597801
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  25597767 aaagagtaaattacactcccctcccctcaaagatg 25597801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 34364660 - 34364627
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  34364660 aagagtaaattacactcccctcccctcaaagatg 34364627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 3075302 - 3075334
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  3075302 agagtaaattacactcccctcccctcaaagatg 3075334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 6292510 - 6292542
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  6292510 agagtaaattacactcccctcccctcaaagatg 6292542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 11759384 - 11759416
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  11759384 agagtaaattacactcccctcccctcaaagatg 11759416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 13439385 - 13439417
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  13439385 agagtaaattacactcccctcccctcaaagatg 13439417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 22934285 - 22934317
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  22934285 agagtaaattacactcccctcccctcaaagatg 22934317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 32867993 - 32867951
Alignment:
Q  338 aaataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  32867993 aaataaattaaagagtaaattacact-ccctttcctcaaagatg 32867951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 2146957 - 2146923
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  2146957 aaagagtaaattacactcccctcccctcaaagatg 2146923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 2680906 - 2680868
Alignment:
Q  11 aatgaatcagaaaagtcaaatattttttataaataggat 49  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  2680906 aatgaatcaaaaaagtcaaatatttcttataaataggat 2680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 8122619 - 8122653
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  8122619 aaagagtaaattacactcccctcccctcaaagatg 8122653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 28298952 - 28298989
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  28298952 gcaatgaatcaaaaaagtcaaatgttttttataaatag 28298989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 31221545 - 31221504
Alignment:
Q  340 ataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||| ||||||||||||||||| ||||| |||||||||    
T  31221545 ataaattatagagtaaattacactcctctctcttcaaagatg 31221504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 6184646 - 6184678
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  6184646 agagtaaattacactcccctcccctcaaagatg 6184678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 6185413 - 6185381
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  6185413 agagtaaattacactcccctcccctcaaagatg 6185381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 6191929 - 6191897
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  6191929 agagtaaattacactcccctcccctcaaagatg 6191897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 11639890 - 11639922
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  11639890 agagtaaattacactcccctcccctcaaagatg 11639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 20260998 - 20261030
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||| |||||||||||||||||    
T  20260998 agagtaaattacacttccctctcctcaaagatg 20261030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 25606918 - 25606950
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  25606918 agagtaaattacactcccctcccctcaaagatg 25606950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 27144175 - 27144207
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  27144175 agagtaaattacactcccctcccctcaaagatg 27144207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 30738184 - 30738216
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||| |||||||||||||||    
T  30738184 agagtaaattacactccgctctcctcaaagatg 30738216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 36847826 - 36847858
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  36847826 agagtaaattacactcccctcccctcaaagatg 36847858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 381
Target Start/End: Original strand, 38669985 - 38670021
Alignment:
Q  345 ttaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||| |||||||||||||||||||||||| |||||||    
T  38669985 ttaatgagtaaattacactcccctctccttaaagatg 38670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 38670764 - 38670732
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||| |||||||||||||||||||||||||    
T  38670764 agagtaagttacactcccctctcctcaaagatg 38670732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 7127741 - 7127706
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  7127741 taaagagtaaattacactcccctcccctcaaagatg 7127706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 14873008 - 14873043
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  14873008 taaagagtaaattacactcccctcccctcaaagatg 14873043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 25527713 - 25527755
Alignment:
Q  339 aataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||  |||||||||||||||||||||| |||||||||||    
T  25527713 aataaatataagagtaaattacactcccctcccctcaaagatg 25527755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 9241621 - 9241588
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  9241621 aagagtaaattacactcccctcccctcaaagatg 9241588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 10283341 - 10283308
Alignment:
Q  12 atgaatcagaaaagtcaaatattttttataaata 45  Q
    |||||||| |||||||||||||||||||||||||    
T  10283341 atgaatcaaaaaagtcaaatattttttataaata 10283308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 12025509 - 12025542
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  12025509 aagagtaaattacactcccctcccctcaaagatg 12025542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 14313184 - 14313217
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  14313184 aagagtaaattacactcccctcccctcaaagatg 14313217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 30627921 - 30627958
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  30627921 gcaatgaatcagaaaagtcaaatgtttcttataaatag 30627958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 9077684 - 9077720
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaata 45  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  9077684 gcaatgaatcaaaaaagtcaaatatttcttataaata 9077720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 11522793 - 11522825
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  11522793 agagtaaattacactcccctcccctcaaagatg 11522825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 11523558 - 11523526
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  11523558 agagtaaattacactcccctcccctcaaagatg 11523526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 12693839 - 12693871
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  12693839 agagtaaattacactcccctcccctcaaagatg 12693871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 17265771 - 17265731
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaataggat 49  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  17265771 gcaatgaatcaaaaaagtcaaatgtttcttataaataggat 17265731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 33950219 - 33950251
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  33950219 agagtaaattacactcccctcccctcaaagatg 33950251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 380
Target Start/End: Original strand, 13685962 - 13685993
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagat 380  Q
    ||||||||||||||||||||||||||||||||    
T  13685962 agagtaaattacactcccctctcctcaaagat 13685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 381
Target Start/End: Complemental strand, 31477044 - 31477013
Alignment:
Q  350 gagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||||||||||    
T  31477044 gagtaaattacactcccctctcctcaaagatg 31477013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 4876701 - 4876735
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagat 380  Q
    |||||||||||||||||||||||| ||||||||||    
T  4876701 taaagagtaaattacactcccctcccctcaaagat 4876735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Complemental strand, 20541064 - 20541030
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  20541064 aaagagtaaattacactcccctcccctcaaagatg 20541030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 347 - 381
Target Start/End: Original strand, 20691106 - 20691140
Alignment:
Q  347 aaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||| |||||||||||    
T  20691106 aaagagtaaattacactcccctcccctcaaagatg 20691140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 32458626 - 32458593
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  32458626 aagagtaaattacactcccctcccctcaaagatg 32458593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 37333896 - 37333929
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  37333896 aagagtaaattacactcccctcccctcaaagatg 37333929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 9119628 - 9119596
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  9119628 agagtaaattacactcccctcccctcaaagatg 9119596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 24625575 - 24625543
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  24625575 agagtaaattacactcccctcccctcaaagatg 24625543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 27979980 - 27979948
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  27979980 agagtaaattacactcccctcccctcaaagatg 27979948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 4558822 - 4558787
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  4558822 taaagagtaaattacactcccctcccctcaaagatg 4558787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 14601413 - 14601448
Alignment:
Q  346 taaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||||| |||||||||||    
T  14601413 taaagagtaaattacactcccctcccctcaaagatg 14601448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 37183067 - 37183106
Alignment:
Q  342 aaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  37183067 aaattgaagagtaaattacactcccctcccctcaaagatg 37183106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 50354334 - 50354373
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatagga 48  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  50354334 gcaatgaatcaaaaaaatcaaatattttttataaatagga 50354373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 5984990 - 5984957
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  5984990 aagagtaaattacactcccctcccctcaaagatg 5984957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 7725487 - 7725454
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  7725487 aagagtaaattacactcccctcccctcaaagatg 7725454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 9197131 - 9197094
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  9197131 gcaatgaatcaaaaaagtcaaatatttcttataaatag 9197094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 10688783 - 10688816
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  10688783 aagagtaaattacactcccctcccctcaaagatg 10688816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 10887705 - 10887738
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  10887705 aagagtaaattacactcccctcccctcaaagatg 10887738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 18365362 - 18365329
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  18365362 aagagtaaattacactcccctcccctcaaagatg 18365329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 22130478 - 22130445
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  22130478 aagagtaaattacactcccctcccctcaaagatg 22130445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 25481279 - 25481246
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  25481279 aagagtaaattacactcccctcgcctcaaagatg 25481246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 27394247 - 27394280
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  27394247 aagagtaaattacactcccctcccctcaaagatg 27394280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 381
Target Start/End: Complemental strand, 44951063 - 44951034
Alignment:
Q  352 gtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||||||||||||    
T  44951063 gtaaattacactcccctctcctcaaagatg 44951034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 52865049 - 52865086
Alignment:
Q  9 gcaatgaatcagaaaagtcaaatattttttataaatag 46  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  52865049 gcaatgaatcaaaaaagtcaattattttttataaatag 52865086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 3090498 - 3090466
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  3090498 agagtaaattacactcccctcccctcaaagatg 3090466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 10888484 - 10888452
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  10888484 agagtaaattacactcccctcccctcaaagatg 10888452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 14602190 - 14602158
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  14602190 agagtaaattacactcccctcccctcaaagatg 14602158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 18364626 - 18364658
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  18364626 agagtaaattacactcccctcccctcaaagatg 18364658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 27256054 - 27256022
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  27256054 agagtaaattacactcccctcccctcaaagatg 27256022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Complemental strand, 12941 - 12908
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  12941 aagagtaaattacactcccctcccctcaaagatg 12908  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 3401 - 3434
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  3401 aagagtaaattacactcccctcccctcaaagatg 3434  T

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Target: scaffold0201 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 15418 - 15377
Alignment:
Q  340 ataaattaaagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||  ||||||||||||||||||||| |||||||||||    
T  15418 ataaattttagagtaaattacactcccctcccctcaaagatg 15377  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 19059 - 19092
Alignment:
Q  348 aagagtaaattacactcccctctcctcaaagatg 381  Q
    |||||||||||||||||||||| |||||||||||    
T  19059 aagagtaaattacactcccctcccctcaaagatg 19092  T

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Target: scaffold0105; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 19727 - 19695
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  19727 agagtaaattacactcccctcccctcaaagatg 19695  T

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Target: scaffold0460 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 13450 - 13482
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  13450 agagtaaattacactcccctcccctcaaagatg 13482  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 27083 - 27051
Alignment:
Q  349 agagtaaattacactcccctctcctcaaagatg 381  Q
    ||||||||||||||||||||| |||||||||||    
T  27083 agagtaaattacactcccctcccctcaaagatg 27051  T

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