View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19526_low_4 (Length: 329)

Name: NF19526_low_4
Description: NF19526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19526_low_4
NF19526_low_4
[»] chr8 (12 HSPs)
chr8 (72-315)||(6350654-6350897)
chr8 (78-315)||(6287140-6287359)
chr8 (232-311)||(6330366-6330445)
chr8 (233-315)||(6273026-6273108)
chr8 (238-315)||(6319910-6319987)
chr8 (14-73)||(6350544-6350603)
chr8 (170-315)||(7457490-7457638)
chr8 (233-315)||(6361700-6361782)
chr8 (133-315)||(6422626-6422814)
chr8 (233-315)||(7469958-7470040)
chr8 (235-315)||(6389459-6389539)
chr8 (235-315)||(6408708-6408788)
[»] chr2 (1 HSPs)
chr2 (236-313)||(42691749-42691826)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 72 - 315
Target Start/End: Original strand, 6350654 - 6350897
Alignment:
Q  72 tgttacaaggtacaaacagacacaataattcttattgatgtaaagtaaaacattaacaataaaacaaacatacataataacatgatcgtaagtaggaagt 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350654 tgttacaaggtacaaacagacacaataattcttattgatgtaaagtaaaacattaacaataaaacaaacatacataataacatgatcgtaagtaggaagt 6350753  T
Q  172 gagggaatggaattccttcacatctgttattcaaagcagcaacacaacaaccatgatccactttagatggagatactattaggaatgcctcggcaagtca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350754 gagggaatggaattccttcacatctgttattcaaagcagcaacacaacaaccatgatccactttagatggagatactattaggaatgcctcggcaagtca 6350853  T
Q  272 atccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6350854 atccttcctcactagaaggataaagtagagtatatggcatcttc 6350897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 78 - 315
Target Start/End: Original strand, 6287140 - 6287359
Alignment:
Q  78 aaggtacaaacagacacaataattcttattgatgtaaagtaaaacattaacaataaaacaaacatacataataacatgatcgtaagtaggaagtgaggga 177  Q
    |||||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||                   |||||| ||||||||    
T  6287140 aaggtacaaaaagacacaatagttcttattgattttaagtaaaacattaacaataaaacaaccatag------------------gtaggaggtgaggga 6287221  T
Q  178 atggaattccttcacatctgttattcaaagcagcaacacaacaaccatgatccactttagatggagatactattaggaatgcctcggcaagtcaatcctt 277  Q
    || ||||||| || | ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  6287222 atagaattccgtctcgtctgttattcaaagcagcaacacaataaccatgacccaatttagatggagatactattgggaatgcctctgcaagtcaatcctt 6287321  T
Q  278 cctcactagaaggataaagtagagtatatggcatcttc 315  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  6287322 cctcactagaaggataaagcaaagtatatggcatcttc 6287359  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 6330366 - 6330445
Alignment:
Q  232 ctttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcat 311  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  6330366 ctttagatggagatactattaggaatgcctctgcaagtcaatcctttctcactagaaggataaagcagagtgtatggcat 6330445  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 6273026 - 6273108
Alignment:
Q  233 tttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||    
T  6273026 tttagatggagatactgttaggaatgcctctgcaagtcaatccttcctcactagaaggataaagcaaagtatacggcatcttc 6273108  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 6319910 - 6319987
Alignment:
Q  238 atggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  6319910 atggagatactattaggaatgcctctgccagtcaatccttcctcactagaaggataaagcagagtgtatggcatcttc 6319987  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 6350544 - 6350603
Alignment:
Q  14 atcagagagaattgaggaaaaactcaattgataccatatttgaaccatatgagacaattg 73  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6350544 atcagagagaattgaggaaaaactcagttgataccatatttgaaccatatgagacaattg 6350603  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 7457490 - 7457638
Alignment:
Q  170 gtgagggaatggaattccttcacatctgttattcaaagcagcaacacaacaaccatgatc-cacttt--agatggagatactattaggaatgcctcggca 266  Q
    |||||||||| | |||||||| ||||  ||||| |||||| |||||||||||| | |||  || |||  ||||||||| ||| || |||||||||| | |    
T  7457490 gtgagggaattggattccttctcatcgattatttaaagcaacaacacaacaacgacgatgacattttttagatggagacactgttgggaatgcctctgga 7457589  T
Q  267 agtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||    
T  7457590 agtcaatccttcctcactagtaggataaagcagtgtatatggcatcttc 7457638  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 6361700 - 6361782
Alignment:
Q  233 tttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    ||||||| |||| ||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  6361700 tttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatcttc 6361782  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 6422626 - 6422814
Alignment:
Q  133 aaacaaacatacataataacatgatcgtaagtaggaag-tgagggaatggaattccttcacatctgttattcaaagcagcaa----cacaacaa-ccatg 226  Q
    |||||||||||||||||||||||| | ||  ||||| | ||||||||| | |||||||| ||||  ||||||| |||| |||    |||||||| |||||    
T  6422626 aaacaaacatacataataacatgaccatacataggaggatgagggaattggattccttctcatcaattattcatagcaacaaacaacacaacaaaccatg 6422725  T
Q  227 atccactttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    |     | |||||||| | ||| || |||||||||| | ||||||||||||| ||||||||||||||||| ||||| ||||||||||||    
T  6422726 acattttctagatggaaacactgttgggaatgcctctgaaagtcaatccttcttcactagaaggataaagcagagtgtatggcatcttc 6422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 7469958 - 7470040
Alignment:
Q  233 tttagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    ||||||| |||| ||| || |||||||||| | ||||||||||||||||||||| ||||||||| || ||||||| |||||||    
T  7469958 tttagatagagacactgttgggaatgcctctggaagtcaatccttcctcactagtaggataaagcagtgtatatgacatcttc 7470040  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 6389459 - 6389539
Alignment:
Q  235 tagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    |||||||||| ||| || |||||||||| | |||||||||||  |||||| |||||||| || | ||| ||||||||||||    
T  6389459 tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttc 6389539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 6408708 - 6408788
Alignment:
Q  235 tagatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatcttc 315  Q
    |||||||||| ||| || |||||||||| | |||||||||||  |||||| |||||||| || | ||| ||||||||||||    
T  6408708 tagatggagacactgttgggaatgcctctgaaagtcaatcctggctcacttgaaggatagagcacagtgtatggcatcttc 6408788  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 42691749 - 42691826
Alignment:
Q  236 agatggagatactattaggaatgcctcggcaagtcaatccttcctcactagaaggataaagtagagtatatggcatct 313  Q
    |||| ||||||||||||||||| ||||   |||| | |||||||||||||||||||| ||| | |||||| |||||||    
T  42691749 agatagagatactattaggaattcctctaaaagttagtccttcctcactagaaggatgaagcaaagtataaggcatct 42691826  T

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