View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19527_high_1 (Length: 441)
Name: NF19527_high_1
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 46708882 - 46708457
Alignment:
| Q |
1 |
atgatgatgtgagtctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708882 |
atgatgatgtgaatctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcc |
46708783 |
T |
|
| Q |
101 |
caatagtgtgtccatttgaaatgccaaaattgttccacgcattcttttacttaggatacttcatctaaataagggatcatcactaccttaaaagttaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708782 |
caatagcgtgtccatttgaaatgccaaaattgttccacgtattcttttacttaggatacttcatctaaataagggatcatcactaccttaaaagttaaaa |
46708683 |
T |
|
| Q |
201 |
cctgcatcatacagattgagtagggtagttgtagggtgaagtagtatttatttggtgttggtgtattattgtactttgtttctaatatttgatgatcatt |
300 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46708682 |
cctgcatcatacagattgagta-gttatttgtagggtgaagtagtatttatttggtgttggtgtattattgtactttgtttctaatatttgatgatcatt |
46708584 |
T |
|
| Q |
301 |
taccatttattttgatataataaataacaactagtattatgattatttaccatttatttgtcttcttaacgtgtttagattttcgactttatttgctgct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46708583 |
taccatttattttgatataataaataacaactagtattatgattatttaccatttatttgtcttcttaacgtgtttagactttcgactttatttgctgct |
46708484 |
T |
|
| Q |
401 |
aactatgtcttcacttgtaaccctttg |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46708483 |
aactatgtcttcacttgtaaccctttg |
46708457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 46707942 - 46707831
Alignment:
| Q |
4 |
atgatgtgagtctcaaaaatcgagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcccaa |
103 |
Q |
| |
|
||||||| || |||||||||||||||||| | |||||||||| ||| |||||||||||||| |||||||||| ||| |||||||| |||||| ||||||| |
|
|
| T |
46707942 |
atgatgttagactcaaaaatcgagttggaacggttaaaatgcaataaactttgctttatccaagaagtgaaggtggactaactggcgcaggcgttcccaa |
46707843 |
T |
|
| Q |
104 |
tagtgtgtccat |
115 |
Q |
| |
|
||||| ||||| |
|
|
| T |
46707842 |
cagtgtctccat |
46707831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University