View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19527_high_4 (Length: 352)
Name: NF19527_high_4
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 19924188 - 19924486
Alignment:
| Q |
11 |
catcatcacgattgcttgcgcgaagaagaggcatcgacatgtacaataagttgaagggttactcgtggaggagaatggttataaaggtaaagagatttta |
110 |
Q |
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| T |
19924188 |
catcaccacgattgcttgcgcgaagaagaggcgtcgacatgtacaataagttgaagggt-actcgtggaggagaatggttatgtaggtgaagagatttta |
19924286 |
T |
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| Q |
111 |
tataataataactttctttgataaataaaaagtgtaatatatgaggtgcgtttcaaaattcaccaaaactcaaggaagcatcaaagtttagagagcgttt |
210 |
Q |
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| T |
19924287 |
tataataataactttctttgataaataaaaagtgtaatatatgaggtgcgtttcaaaattcaccaaaact-aaggaagcatcaaagtttagagagcgttt |
19924385 |
T |
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| Q |
211 |
atcgattatttgtcaacatggtcttgtcaaaattcaccatatcccatgtttatagtacaattttatatcttgaactaaatgttgtgtaaatgagataaat |
310 |
Q |
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| T |
19924386 |
atcgattatttgtcaacatggtcttgtcaaaattcaccatatcccatgtttatagtacaattttatatcttgaactaaatgttgtgtaaatgagatcaat |
19924485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 19924484 - 19924546
Alignment:
| Q |
275 |
atatcttgaactaaatgttgtgtaaatgagataaataaagtttcttctctaagttttattttt |
337 |
Q |
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| T |
19924484 |
atatcttgaactaaatgttgtgtaaatgagataaataaagtttcttctctaagttttattttt |
19924546 |
T |
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