View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19527_high_5 (Length: 346)
Name: NF19527_high_5
Description: NF19527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19527_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 35095932 - 35096071
Alignment:
| Q |
191 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatttttg |
290 |
Q |
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| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatttttg |
35096031 |
T |
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| Q |
291 |
agatggaggagaaagagaaacaaacgcaaggagcagaaag |
330 |
Q |
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| T |
35096032 |
agatggaggagaaagagaaacaaacgcaaggagcagaaag |
35096071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 35095754 - 35095881
Alignment:
| Q |
13 |
tgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095754 |
tgaagagagtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatg |
35095853 |
T |
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| Q |
113 |
gtgccataataataaaatatagtgaagg |
140 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35095854 |
gtgccataataataaaatatagtgaagg |
35095881 |
T |
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